Academic Directorate

Research Output

2020

A Meta-analysis Describing the Effects of the Essential oils Blend Agolin Ruminant on Performance, Rumen Fermentation and Methane Emissions in Dairy Cows

Belanche, A., Newbold, J., Morgavi, D. P., Bach, A., Zweifel, B. & Yáñez-Ruiz, D. R., 3 Apr 2020, In : Animals. 10, 4, 620.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
3 Downloads (Pure)

Effect of age and the individual on the gastrointestinal bacteriome of ponies fed a high-starch diet

Morrison, P. K., Newbold, J., Jones, E., Worgan, H. J., Grove-White, D. H., Dugdale, A. H., Barfoot, C., Harris, P. A. & Argo, C. M., May 2020, In : PLoS ONE. 15, 5, 22 p., e0232689.

Research output: Contribution to journalArticle

Open Access
File
2 Downloads (Pure)

Enhancing African orphan crops with genomics

Jamnadass, R., Mumm, R. H., Hale, I., Hendre, P., Muchugi, A., Dawson, I. K., Powell, W., Graudal, L., Yana-Shapiro, H., Simons, A. J. & Van Deynze, A., Apr 2020, In : Nature Genetics. 52, p. 356-360 5 p.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)

Review: Ruminal microbiome and microbial metabolome: effects of diet and ruminant host

Newbold, C. J. & Ramos-Morales, E., Mar 2020, In : Animal. 14, S1, p. s78-s86

Research output: Contribution to journalReview article

2 Citations (Scopus)

Scotland’s biodiversity progress to 2020 Aichi targets: conserving genetic diversity--development of a national approach for addressing Aichi Biodiversity Target 13 that includes wild species

Hollingsworth, PM., O'Brien, D., Ennos, RA., Yahr, R., Neaves, L., Ahrends, A., Ballingall, KT., Brooker, RW., Burke, T., Cavers, S., Dawson, IK., Elston, D. A., Kerr, J., Marshall, DF., Pakeman, R. J., Trivedi, C., Wall, E., Wright, F. & Ogden, R., 2020, Inverness: Scottish Natural Heritage. 38 p.

Research output: Book/Report/Policy BriefCommissioned report

Open Access

The equine gastrointestinal microbiome: impacts of weight-loss

Morrison, P. K., Newbold, J., Jones, E., Worgan, H. J., Grove-White, D. H., Dugdale, A. H., Barfoot, C., Harris, P. A. & Argo, C. M., 4 Mar 2020, In : BMC Veterinary Research. 16, 78.

Research output: Contribution to journalArticle

Open Access
File
7 Downloads (Pure)
2019

A multi-kingdom study reveals the plasticity of the rumen microbiota in response to a shift from non-grazing to grazing diets in sheep

Belanche, A., Kingston-Smith, A. H., Griffith, G. W. & Newbold, C. J., 11 Feb 2019, In : Frontiers in Microbiology. 10, 17 p., 122.

Research output: Contribution to journalArticle

Open Access
File
9 Citations (Scopus)
14 Downloads (Pure)

Biotic interactions are an unexpected yet critical control on the complexity of an abiotically driven polar ecosystem

Lee, C. K., Laughlin, D. C., Bottos, E. M., Caruso, T., Joy, K., Barrett, J. E., Brabyn, L., Nielsen, U. N., Adams, B. J., Wall, D. H., Hopkins, D. W., Pointing, S. B., McDonald, I. R., Cowan, D. A., Banks, J. C., Stichbury, G. A., Jones, I., Zawar-Reza, P., Katurji, M., Hogg, I. D. & 4 others, Sparrow, A. D., Storey, B. C., Allan Green, T. G. & Cary, S. C., 15 Feb 2019, In : Communications Biology. 2, 62.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
8 Downloads (Pure)

BrAPI - an application programming interface for plant breeding applications

Selby, P., Abbeloos, R., Backlund, J. E., Basterrechea Salido, M., Bauchet, G., Benites-Alfaro, O., Birkett, C., Calaminos, V. C., Carceller, P., Cornut, G., Vasques Costa, B., Edwards, J. D., Finkers, R., Gao, S. Y., Ghaffar, M., Glaser, P., Guignon, V., Hok, P., Kilian, A., König, P. & 30 others, Lagare, J. E. B., Lange, M., Laporte, M-A., Larmande, P., LeBauer, D., Lyon, D., Marshall, D., Matthews, D., Milne, I., Mistry, N., Morales, N., Mueller, L., Neveu, P., Papoutsoglou, E., Pearce, B., Perez-Masias, I., Pommier, C., Ramirez-Gonzalez, R. H., Rathore, A., Raquel, A. M., Raubach, S., Rife, T., Robbins, K., Rouard, M., Sarma, C., Scholz, U., Sempéré, G., Shaw, P., Simon, R. & Soldevilla, N., 15 Oct 2019, In : Bioinformatics (Oxford, England). 35, 20, p. 4147-4155 9 p., btz190.

Research output: Contribution to journalArticle

Open Access
File
11 Citations (Scopus)
7 Downloads (Pure)

Breeders’ views on the production of new and orphan crops in Africa: a survey of constraints and opportunities

Dawson, ID., Barnes, AP., Jamnadass, R., Danquah, E., Mumm, R. H., Hoad, SP., Burnett, FJ., Hale, I., Mausch, K., Hendre, P., Powell, W. & Revoredo-Giha, C., May 2019, Working Paper No. 296 ed., World Agroforestry United Nations, 46 p.

Research output: Working paper

Open Access
File
43 Downloads (Pure)

Contributions of biodiversity to the sustainable intensification of food production: Thematic study for The State of the World's Biodiversity for Food and Agriculture

Dawson, ID., Attwood, S., Park, S. E., Jamnadass, R., Powell, W., Sunderland, T., Kindt, R., McMullin, S., Hoebe, PN., Baddeley, JA., Staver, C., Vadez, V., Carsan, S., Roshetko, J. M., Amri, A., Karamura, E., Karamura, D., Paulo, V. B., Hossain, M. E., Phillips, M. & 7 others, Kumar, A., Lilleso, J-P. B., Benzie, J., Sabastian, G. E., Ekesa, B., Ocimati, W. & Graudal, L., 1 Jun 2019, CA4003EN ed. Rome, Italy: Food and Agriculture Organisation. 42 p.

Research output: Book/Report/Policy BriefCommissioned report

Open Access
File
1 Citation (Scopus)
74 Downloads (Pure)

Differentially expressed mRNAs, proteins and miRNAs associated to energy metabolism in skeletal muscle of beef cattle identified for low and high residual feed intake

Carvalho, E. B., Gionbelli, M. P., Rodrigues, R. TS., Bonilha, S. FM., Newbold, C. J., Guimarães, S. EF., Silva, W., Verardo, L. L., Silva, F. F., Detmann, E. & Duarte, M. S., 17 Jun 2019, In : BMC Genomics. 20, 1, 501.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
12 Downloads (Pure)

Genome-wide association studies pathway-based meta-analysis for residual feed intake in beef cattle

Duarte, D. A. S., Newbold, C. J., Detmann, E., Silva, F. F., Freitas, P. H. F., Veroneze, R. & Duarte, M. S., Apr 2019, In : Animal Genetics. 50, 2, p. 150-153 4 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Mapping the H2 resistance effective against Globodera pallida pathotype Pa1 in tetraploid potato

Strachan, S. M., Armstrong, M. R., Kaur, A., Wright, K. M., Lim, T. Y., Baker, K., Jones, J., Bryan, G., Blok, V. & Hein, I., Apr 2019, In : TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 132, 4, p. 1283-1294 12 p.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
11 Downloads (Pure)

Maternal versus artificial rearing shapes the rumen microbiome having minor long-term physiological implications

Belanche, A., Yáñez-Ruiz, D. R., Detheridge, A. P., Griffith, G. W., Kingston-Smith, A. H. & Newbold, C. J., Nov 2019, In : Environmental Microbiology. 21, 11, p. 4360-4377 18 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
20 Downloads (Pure)

Nematodes in a polar desert reveal the relative role of biotic interactions in the coexistence of soil animals

Caruso, T., Hogg, I. D., Nielsen, U. N., Bottos, E. M., Lee, C. K., Hopkins, DW., Cary, S. C., Barrett, J. E., Allan Green, T. G., Storey, B. C., Wall, D. H. & Adams, B. J., 2019, In : Communications Biology. 2, 63.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
3 Downloads (Pure)

Not all saponins have a greater antiprotozoal activity than their related sapogenins

Ramos-Morales, E., Lyons, L., de la Fuente, G., Braganca, R. & Newbold, C. J., Jul 2019, In : FEMS Microbiology Letters. 366, 13, fnz144.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
8 Downloads (Pure)

Rumen bacterial community responses to DPA, EPA and DHA in cattle and sheep: a comparative in vitro study

Carreño, D., Toral, P. G., Pinloche, E., Belenguer, A., Yáñez-Ruiz, D. R., Hervás, G., McEwan, N. R., Newbold, C. J. & Frutos, P., 14 Aug 2019, In : Scientific Reports. 9, 1, 11857.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
8 Downloads (Pure)

Slight changes in the chemical structure of haemanthamine greatly influence the effect of the derivatives on rumen fermentation in vitro

Ramos-Morales, E., Tibble-Howlings, J., Lyons, L., Ogbu, M. O., Murphy, P. J., Braganca, R. & Newbold, CJ., 21 Feb 2019, In : Scientific Reports. 9, 1, 7 p., 2440.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
10 Downloads (Pure)

Soil bacterial diversity is positively associated with air temperature in the maritime Antarctic

Dennis, P. G., Newsham, K. K., Rushton, S. P., O'Donnell, A. G. & Hopkins, D. W., 2019, In : Scientific Reports. 9, 1, 2686.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
13 Downloads (Pure)

Sustainability of feeding plant by-products: a review of the implications for ruminant meat production

Salami, S. A., Luciano, G., O'Grady, M. N., Biondi, L., Newbold, C. J., Kerry, J. P. & Priolo, A., May 2019, In : Animal Feed Science and Technology. 251, p. 37-55 19 p.

Research output: Contribution to journalReview article

31 Citations (Scopus)

The role of genetics in mainstreaming the production of new and orphan crops to diversify food systems and support human nutrition

Dawson, IK., Powell, W., Hendre, P., Bancic, JB., Hickey, JM., Kindt, R., Hoad, SP., Hale, I. & Jamnadass, R., Oct 2019, In : New Phytologist. 224, 1, p. 37-54 18 p.

Research output: Contribution to journalReview article

Open Access
File
9 Citations (Scopus)
3 Downloads (Pure)
2018

Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present and future

Huws, SA., Creevey, C., Oyama, LB., Mizrahi, I., Denman, SE., Popova, M., Munoz-tamayo, R., Forano, E., Waters, SM., Hess, M., Tapio, I., Smidt, H., Krizsan, S., Yanez-Ruiz, DR., Belanche, A., Guan, LL., Gruninger, RJ., McAllister, T., Newbold, J., Roehe, R. & 17 others, Dewhurst, RJ., Snelling, TJ., Watson, M., Suen, G., Hart, E., Kingston-Smith, A., Scollan, N., Do Prado, RM., Pilau, E., Mantovani, HC., Attwood, GT., Edwards, JE., McEwan, N., Morrison, S., Mayorga, O., Elliott, C. & Morgavi, DP., 25 Sep 2018, In : Frontiers in Microbiology. 9, p. 21-61 33 p.

Research output: Contribution to journalReview article

Open Access
File
44 Citations (Scopus)
6 Downloads (Pure)

Analysis of the rumen microbiome and metabolome to study the effect of an antimethanogenic treatment applied in early life of kid goats

Abecia, L., Martinez-Fernandez, G., Waddams, K., Martin-Garcia, AI., Pinloche, E., Creevey, CJ., Denman, SE., Newbold, CJ. & Yanez-Ruiz, DR., 9 Oct 2018, In : Frontiers in Microbiology. 9, 2227.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
5 Downloads (Pure)

Characterisation of the ruminal fermentation and microbiome in lambs supplemented with hydrolysable and condensed tannins

Salami, S., Valenti, B., Bella, M., Luciano, G., O'Grady, M., Kerry, J., Jones, E., Priolo, A. & Newbold, CJ., 10 Apr 2018, In : FEMS Microbiology Ecology. 94, 5, p. 1 - 9 9 p.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
1 Downloads (Pure)

Comparison of NIRS and wet chemistry methods for the nutritional analysis of haylages for horses

Harris, PA., Nelson, S., Carslake, HB., Argo, CM., Wolf, R., Fabri, FB., Brolsma, KM., van Oostrum, MJ. & Ellis, AD., 4 Sep 2018, In : Journal of Equine Veterinary Science. 71, p. 13 - 20 8 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Delivering perennial new and orphan crops for resilient and nutritious farming systems

Dawson, I. K., McMullin, S., Kindt, R., Muchugi, A., Hendre, P., Lillesø, J-P. B. & Jamnadass, R., 27 Nov 2018, The Climate-Smart Agriculture Papers. Rosenstock, T., Nowak, A. & Girvetz, E. (eds.). Springer International Publishing, p. 113-125 13 p. (The Climate-Smart Agriculture Papers).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access

Editorial: Engineering rumen metabolic pathways: where we are, and where are we heading

Ungerfeld, E. M. & Newbold, CJ., 4 Jan 2018, In : Frontiers in Microbiology. 8, 2627.

Research output: Contribution to journalEditorial

Open Access
File

Effect of dietary fat to starch content on fecal microbiota composition and activity in dogs

Schauf, S., de la Fuente, G., Newbold, CJ., Salas-Mani, A., Torre, C., Abecia, L. & Castrillo, C., 27 Jul 2018, In : Journal of Animal Science. 96, 9, p. 3684 - 3698 15 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Exploring management practices and attitudes towards biosecurity of small-scale poultry and pig keepers

Correia-Gomes, C., Auty, HK., Henry, MK., Sparks, NHC. & Gunn, GJ., Nov 2018, p. 112. 1 p.

Research output: Contribution to conferenceAbstract

Reliably colonising broiler chickens with Campylobacter spp. using a litter-based method

Sandilands, V., Whyte, F., Williams, LK., Wilkinson, TS., Sparks, NHC. & Humphrey, TJ., 21 Sep 2018, In : British Poultry Science. 59, 6, p. 698 - 702 5 p.

Research output: Contribution to journalArticle

Open Access
File
23 Downloads (Pure)

Short- and long-term effects of conventional and artificial rearing strategies on the health and performance of growing lambs

Belanche, A., Cooke, J., Jones, E., Worgan, HJ. & Newbold, CJ., 17 Aug 2018, In : Animal. 13, 4, p. 740-749

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
48 Downloads (Pure)

Supporting human nutrition in Africa through the integration of new and orphan crops into food systems: Placing the work of the African Orphan Crops Consortium in context

Dawson, ID., Hendre, P., Powell, W., Sila, D., McMullin, S., Simons, T., Revoredo-Giha, C., Odeny, D. A., Barnes, AP., Graudal, L., Watson, CA., Hoad, SP., Burnett, FJ., Muchugi, A., Roshetko, J. M., Hale, I. L., Van Deynze, A., Mayes, S., Kindt, R., Prabhu, R. & 5 others, Cheng, S., Xu, X., Guarino, L., Shapiro, H. & Jamnadass, R., Feb 2018, Working Paper No. 276 ed., World Agroforestry United Nations, 42 p.

Research output: Working paper

Open Access
File
92 Downloads (Pure)

The effect of an isoflavonid-rich liquorice extract on fermentation, methanogenesis and the microbiome in the rumen simulation technique

Ramos-Morales, E., Rossi, G., Cattin, M., Jones, E., Braganca, R. & Newbold, C. J., 19 Jan 2018, In : FEMS Microbiology Ecology. 94, 3, fiy009.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
6 Downloads (Pure)

The equine gastrointestinal microbiome: impacts of age and obesity

Morrison, PM., Newbold, CJ., Jones, E., Worgan, H. J., Grove-White, D. H., Dugdale, A. H., Barfoot, C., Harris, P. A. & Argo, C. M., 7 Dec 2018, In : Frontiers in Microbiology. 9, 13 p., 3017.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
19 Downloads (Pure)

Welfare risks of repeated application of on-farm killing methods for poultry

Martin, JE., Sandercock, DA., Sandilands, V., Sparrey, J., Baker, L., Sparks, NHC. & McKeegan, DEF., 15 Mar 2018, In : Animals. 8, 3, p. 39 - 52 14 p., 39.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
12 Downloads (Pure)
2017

Agricultural diversification as an adaptation strategy

López Noriega, I., Dawson, I. K., Vernooy, R., Köhler-Rollefson, I. & Halewood, M., 6 Jun 2017, In : Agriculture for Development. 30, p. 25-28 4 p.

Research output: Contribution to journalArticle

Open Access
File
5 Downloads (Pure)

Phenotypic and genetic parameters for selected production and reproduction traits of Mpwapwa cattle in low-input production systems

Chawala, AR., Banos, G., Komwihangilo, DM., Peters, A. & Chagunda, MGG., 5 May 2017, In : South African Journal of Animal Science. 47, 3, p. 307 - 319 13 p.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
3 Downloads (Pure)
2016

Production and dose determination of the Infection and Treatment Method (ITM) Muguga cocktail vaccine used to control East Coast fever in cattle

Patel, E., Mwaura, S., Kiara, H., Morzaria, S., Peters, A. & Toye, P., 1 Mar 2016, In : Ticks and Tick-borne Diseases. 7, 2, p. 306-314 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

The economic impact of eradicating peste des petits ruminants: A Benefit-Cost Analysis

Jones, B. A., Rich, K. M., Mariner, J. C., Anderson, J., Jeggo, M., Thevasagayam, S., Cai, Y., Peters, A. R. & Roeder, P., 22 Feb 2016, In : PLoS ONE. 11, 2, e0149982.

Research output: Contribution to journalArticle

Open Access
File
43 Citations (Scopus)
32 Downloads (Pure)

The opportunity to eradicate peste des petits ruminants

Mariner, J. C., Jones, B. A., Rich, K. M., Thevasagayam, S., Anderson, J., Jeggo, M., Cai, Y., Peters, A. R. & Roeder, P. L., 1 May 2016, In : Journal of Immunology. 196, 9, p. 3499-506 8 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)
2015
Open Access
File
19 Citations (Scopus)
34 Downloads (Pure)

Genome-wide transcriptomic analysis identifies pathways affected by the infusion of Clostridium perfringens culture supernatant in the duodenum of broilers in situ

Athanasiadou, S., Russell, KM., Kaiser, P., Kanellos, T., Burgess, STG., Mitchell, MA., Clutton, E., Naylor, SW., Low, CJ., Hutchings, MR. & Sparks, NHC., 2015, In : Journal of Animal Science. 93, 6, p. 3152 - 3163 12 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Response of the rumen archaeal and bacterial populations to anti-methanogenic organosulphur compounds in continuous-culture fermenters

Martínez-Fernández, G., Abecia, L., Martín-García, A. I., Ramos-Morales, E., Denman, S. E., Newbold, C. J., Molina-Alcaide, E. & Yáñez-Ruiz, D. R., Aug 2015, In : FEMS Microbiology Ecology. 91, 8, p. fiv079

Research output: Contribution to journalArticle

12 Citations (Scopus)

Superoxide dismutase SodB is a protective antigen against Campylobacter jejuni colonisation in chickens

Chintoa-Uta, C., Cassady-Cain, RL., Al-Haideri, H., Watson, E., Kelly, DJ., Smith, DGE., Sparks, NHC., Kaiser, P. & Stevens, MP., 17 Nov 2015, In : Vaccine. 33, 46, p. 6206 - 6211 6 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
37 Downloads (Pure)
2014

Association between digesta pH, body weight and nutrient utilization in chickens of different body weights and at different ages

Dono, ND., Sparks, NHC. & Olukosi, OA., 2014, In : Journal of Poultry Science. 51, 2, p. 180 - 184 5 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Microbiology of fresh eggs

Sparks, NHC., Batt, CA. (ed.) & Tortorello, ML. (ed.), 2014, Encyclopedia of Food Microbiology. Batt, CA. & Tortorello, ML. (eds.). New York, USA: Elsevier Academic Press, Vol. 2. p. 610 - 616 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

The barley genome sequence assembly reveals three additional members of the CslF (1,3;1,4)-β-glucan synthase gene family

Schreiber, M., Wright, F., MacKenzie, K., Hedley, P. E., Schwerdt, J. G., Little, A., Burton, R. A., Fincher, G. B., Marshall, D., Waugh, R. & Halpin, C., 2014, In : PLoS ONE. 9, 3, e90888.

Research output: Contribution to journalArticle

Open Access
27 Citations (Scopus)
2013

Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps

Sharma, S. K., Bolser, D., de Boer, J., Sønderkær, M., Amoros, W., Carboni, M. F., D'Ambrosio, J. M., de la Cruz, G., Di Genova, A., Douches, D. S., Eguiluz, M., Guo, X., Guzman, F., Hackett, C. A., Hamilton, J. P., Li, G., Li, Y., Lozano, R., Maass, A., Marshall, D. & 25 others, Martinez, D., McLean, K., Mejía, N., Milne, L., Munive, S., Nagy, I., Ponce, O., Ramirez, M., Simon, R., Thomson, S. J., Torres, Y., Waugh, R., Zhang, Z., Huang, S., Visser, R. G. F., Bachem, C. W. B., Sagredo, B., Feingold, S. E., Orjeda, G., Veilleux, R. E., Bonierbale, M., Jacobs, J. M. E., Milbourne, D., Martin, D. M. A. & Bryan, G. J., 6 Nov 2013, In : G3: Genes, Genomes, Genetics. 3, 11, p. 2031-47 17 p.

Research output: Contribution to journalArticle

Open Access
File
128 Citations (Scopus)
17 Downloads (Pure)

Early postnatal immunisation against gonadotrophin-releasing hormone induces a high but differential immune response in heifer calves

Hernandez-Medrano, JH., Williams, RW., van Drunen Littel-van den Hurk, S., Peters, AR., Hannant, D., Campbell, BK. & Webb, R., Oct 2013, In : Research in Veterinary Science. 95, 2, p. 472 - 479 8 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)