Centre for Epidemiology and Planetary Health (CEPH)

2023

Novel Escherichia coli-Infecting Bacteriophages Isolated from Uganda That Target Human Clinical Isolates

Nale, J. Y., Chan, B., Nnadi, N. E., Cheng, J. K. J., Matts, S., Nezam-Abadi, N., Turkington, C. J. R., Charreton, L. M., Bola, H., Nazir, R., Hoza, A. S., Wamala, S. P., Ibanda, I., Maina, A. N., Apopo, A. A., Msoffe, V. T., Moremi, N., Moore, G. W., Asiimwe, I. & Namatovu, A. & 18 others, Mutumba, P., Kamya, D., Nabunje, R., Nakabugo, I., Kazwala, R. R., Kangethe, E., Negash, A. A., Watelo, A. K., Bukamba, N., Muhindo, G., Lubowa, N. M., Jillani, N., Nyachieo, A., Nasinyama, G., Nakavuma, J., Millard, A., Nagel, T. E. & Clokie, M. R. J., 20 Sept 2023, (First published) In: PHAGE: Therapy, Applications, and Research. 4, 3, p. 141-149 9 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

File

1 Citation (Scopus)

57 Downloads (Pure)

Novel ribotype/sequence type associations and diverse CRISPR-Cas systems in environmental Clostridioides difficile strains from Northern Iraq

Rashid, S. J., Nale, J., Millard, A. & Clokie, M. R. J., 18 Sept 2023, (First published) In: FEMS Microbiology Letters. 370, fnad091.

Research output: Contribution to journal › Article › peer-review

Open Access

File

29 Downloads (Pure)

Oregano Essential Oil and Purple Garlic Powder Effects on Intestinal Health, Microbiota Indicators and Antimicrobial Resistance as Feed Additives in Weaning Piglets

Serrano-Jara, D., Rivera-Gomis, J., Tornel, J. A., Jordán, M. J., Martínez-Conesa, C. & Pablo, M. J. C., 28 Dec 2023, (First published) In: Animals. 14, 1, 111.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2 Citations (Scopus)

42 Downloads (Pure)

Pathogen genomics and phage-based solutions for accurately identifying and controlling Salmonella pathogens.

Lopez-Garcia, A. V., AboOun, M., Nunez-Garcia, J., Nale, J., Gaylov, E., Phothaworn, P., Sukjoi, C., Thiennimitr, P., Malik, D. J., Korbsrisate, S., Clokie, M. R. J. & Anjum, M., 27 May 2023, (First published) In: Frontiers in Microbiology. 14, 1166615.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2 Citations (Scopus)

75 Downloads (Pure)

Phylogenetic relationship and virulence composition of Escherichia coli O26:H11 cattle and human strain collections in Scotland; 2002-2020

Hoyle, D., Wee, B. A., Macleod, K., Chase-Topping, M. E., Bease, A., Tongue, S., Gally, D. L., Delannoy, S., Fach, P., Pearce, M., Gunn, G., Holmes, A. & Allison, L., 6 Nov 2023, (First published) In: Frontiers in Microbiology. 14, 1260422.

Research output: Contribution to journal › Article › peer-review

Open Access

File

37 Downloads (Pure)

Removing zinc oxide from pig diets – what are the options? Podcast

Rodrigues da Costa, M. (Photographer), Botero Degiovanni, H. (Photographer), Beechener, E. (Photographer) & Nale, J. (Photographer), 28 Feb 2023

Research output: Non-textual form › Digital or Visual Products

Open Access

Report to Cruickshank Trust on Public Education & Food Resilience

Humphry, R., 3 May 2023, SRUC. 13 p.

Research output: Book/Report/Policy Brief/Technical Brief › Commissioned report

Open Access

Scotland’s SAIC funded “Gill Health in Scottish Farmed Salmon” project 2018 – 2023: Highlights.

Boerlage, A., Ashby, A., Eze, J., Humphry, R., Duncan, A., Smith, C., Stewart, K., Barr, W., Pearce, M. C., Gunn, G. & Reeves, A., 25 Oct 2023.

Research output: Contribution to conference › Abstract

Spatio-temporal evaluation of social media as a tool for livestock disease surveillance

Munaf, S., Swingler, K., Brülisauer, F., O'Hare, A., Gunn, G. & Reeves, A., Dec 2023, In: One Health. 17, 100657.

Research output: Contribution to journal › Article › peer-review

Open Access

File

1 Citation (Scopus)

36 Downloads (Pure)

TechCare UK pilots - Integrated sheep system studies using technologies for welfare monitoring

McLaren, A., Waterhouse, A., Kenyon, F., MacDougall, H., Beechener, E., Walker, A., Reeves, M., Lambe, N., Holland, J., Thomson, A., Duncan, J., Barnes, A., Dwyer, C., Gimbert, F., Gautier, J.-M., Tesniere, G. & Morgan-Davies, C., 28 Aug 2023, (First published) Book of Abstracts of the 74th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Text mining of veterinary forums for epidemiological surveillance supplementation

Munaf, S., Swingler, K., Brülisauer, F., O’Hare, A., Gunn, G. & Reeves, A., 25 Sept 2023, (First published) In: Social Network Analysis and Mining. 13, 1, 121.

Research output: Contribution to journal › Article › peer-review

Open Access

File

1 Citation (Scopus)

9 Downloads (Pure)

The duplicated P450s CYP6P9a/b drive carbamates and pyrethroids cross-resistance in the major African malaria vector Anopheles funestus

Mugenzi, L. M. J., A Tekoh, T., S Ibrahim, S., Muhammad, A., Kouamo, M., Wondji, M. J., Irving, H., Hearn, J. & Wondji, C. S., 27 Mar 2023, (First published) In: PLoS Genetics. 19, 3, e1010678.

Research output: Contribution to journal › Article › peer-review

Open Access

File

9 Citations (Scopus)

31 Downloads (Pure)

The potential role of bacteriophages in Salmonella diversity, disease and control

Nale, J., 28 Sept 2023.

Research output: Contribution to conference › Abstract

Toward a One Health Surveillance System in Cuba: Co-Productive Stakeholder Engagement

Abreu, M. I. P., García, O. L., Hernandez, B. D., Valle, D. D. L. N. M., Zamora, P. A., Pérez, D. Q., Dürr, S., Silva, L. C., Carmo, L. P. & Berezowski, J., 31 Jul 2023, (First published) One Health Cases. CABI International, Vol. 2023.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

Open Access

File

12 Downloads (Pure)

Towards an One Health Surveillance System in Cuba: co-productive stakeholder engagement

Montano Valle de Las Nieves, D., Ley García, O., Delgado Hernandez, B., Zamora, P. A., Percedo Abreu, M. I., Quiñones, D., Cunha Silva, L., Carmo, L. P., Berezowski, J. & Dürr, S., 8 Aug 2023, In: CABI One Health.

Research output: Contribution to journal › Article › peer-review

Open Access

File

18 Downloads (Pure)

Value of simplified lung lesions scoring systems to inform future codes for routine meat inspection in pigs

Pessoa, J., McAloon, C., Boyle, L., Manzanilla, E. G., Norton, T. & Rodrigues da Costa, M., 30 Jun 2023, (First published) In: Porcine Health Management. 9, 31.

Research output: Contribution to journal › Article › peer-review

Open Access

File

1 Citation (Scopus)

23 Downloads (Pure)

What is your perception of biosecurity and disease spread in animals? Preliminary results from a survey to the general public

Moskalenko, L., Rodrigues da Costa, M. & Ciaravino, G., 7 Feb 2023, p. 19. 43 p.

Research output: Contribution to conference › Abstract

2022

All hope is not lost: development of a bacteriophage cocktail to control Salmonella biofilms under chicken, pig and human gut conditions

Nale, J., 2022.

Research output: Contribution to conference › Paper › peer-review

A modelling framework for the prediction of the herd-level probability of infection from longitudinal data

Madouasse, A., Mercat, M., van Roon, A. M., Graham, D. A., Guelbenzu, M., Santman-Berends, I. M., van Schaik, G., Nielen, M., Frössling, J., Agren, E., Humphry, R., Eze, J., Gunn, G., Henry, M., Gethmann, J., More, S. J., Toft, N. & Fourichon, C., 7 Jan 2022, (First published) In: Peer Community Journal. 2, e4.

Research output: Contribution to journal › Article › peer-review

Open Access

File

6 Citations (Scopus)

84 Downloads (Pure)

A reverse vaccinology approach identifies putative vaccination targets in the zoonotic nematode Ascaris

Evangelista, F., van Vliet, A., Lawton, S. & Betson, M., 1 Nov 2022, (First published) In: Frontiers in Veterinary Science. 9, 11 p., 1014198.

Research output: Contribution to journal › Article › peer-review

Open Access

File

5 Citations (Scopus)

35 Downloads (Pure)

A Systematic Review on the Link between Animal Welfare and Antimicrobial Use in Captive Animals

Rodrigues da Costa, M. & Diana, A., 14 Apr 2022, (First published) In: Animals. 12, 8, 1025.

Research output: Contribution to journal › Review article › peer-review

Open Access

File

11 Citations (Scopus)

85 Downloads (Pure)

Bacteriological Survey of Fresh Minced Beef on Sale at Retail Outlets in Scotland in 2019: Three Foodborne Pathogens, Hygiene Process Indicators, and Phenotypic Antimicrobial Resistance

Bishop, H., Evans, J., Eze, J., Webster, C., Humphry, R., Beattie, R., White, J., Couper, J., Allison, L., Brown, D. & Tongue, S., 1 Sept 2022, In: Journal of Food Protection. 85, 9, p. 1370-1379 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2 Citations (Scopus)

343756 Downloads (Pure)

Brexit and rural social entrepreneurship in the UK

Steiner, A., Stephen, K. & Munoz, S. A., 18 Oct 2022, (First published) Rural Governance in the UK: Towards a Sustainable and Equitable Society. Routledge

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

Open Access

File

2 Citations (Scopus)

44 Downloads (Pure)

Brief Digital Interventions to Support the Psychological Well-being of NHS Staff During the COVID-19 Pandemic: 3-Arm Pilot Randomized Controlled Trial

De Kock, J. H., Latham, H. A., Cowden, R. G., Cullen, B., Narzisi, K., Jerdan, S., Munoz, S. A., Leslie, S. J., Stamatis, A. & Eze, J., 4 Apr 2022, (First published) In: JMIR Mental Health. 9, 4, e34002.

Research output: Contribution to journal › Article › peer-review

Open Access

File

11 Citations (Scopus)

50 Downloads (Pure)

CaMKII regulates neuromuscular activity and survival of the human blood fluke Schistosoma mansoni

Hirst, N. L., Lawton, S. P. & Walker, A. J., Dec 2022, In: Scientific Reports. 12, 1, 19831.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2 Citations (Scopus)

47 Downloads (Pure)

Comparison of the confidence in freedom from infection based on different control programmes between EU member states: STOC free

van Schaik, G., Madouasse, A., van Roon, A., Frössling, J., Gethmann, J., Fourichon, C., Mercat, M., More, S., Ågren, E., Sauter-Louis, C., Gunn, G., Eze, J., Humphry, R., Henry, M., Graham, D., Guelbenzu, M., Nielen, M. & Santman-Berends, I., 9 Mar 2022, 4 ed. 13 p. (EFSA Supporting Publications)

Research output: Book/Report/Policy Brief/Technical Brief › Commissioned report › peer-review

Open Access

File

9 Downloads (Pure)

Diversity, Dynamics and Therapeutic Application of Clostridioides difficile Bacteriophages

Nale, J. Y., Thanki, A. M., Rashid, S. J., Shan, J., Vinner, G. K., Dowah, A. S. A., Cheng, J. K. J., Sicheritz-Pontén, T. & Clokie, M. R. J., 12 Dec 2022, (First published) In: Viruses. 14, 12, 2772.

Research output: Contribution to journal › Review article › peer-review

Open Access

File

9 Citations (Scopus)

43 Downloads (Pure)

Evaluation design of the patient-centred pathways of early palliative care, supportive ecosystems and appraisal standard (InAdvance): a randomised controlled trial

Yang-Huang, J., Doñate-Martínez, A., Garcés, J., Campos, M. S. G., Romero, R. V., López, M. E. G., Fernandes, A., Camacho, M., Gama, A., Reppou, S., Bamidis, P. D., Linklater, G., Hines, F., Eze, J., Raat, H. & InAdvance consortium, 21 Oct 2022, (First published) In: BMC Geriatrics. 22, 1, 812.

Research output: Contribution to journal › Report/ Case Report › peer-review

Open Access

File

46 Downloads (Pure)

FAIR data pipeline: provenance-driven data management for traceable scientific workflows

Mitchell, S. N., Lahiff, A., Cummings, N., Hollocombe, J., Boskamp, B., Field, R., Reddyhoff, D., Zarebski, K., Wilson, A., Viola, B., Burke, M., Archibald, B., Bessell, P., Blackwell, R., Boden, L. A., Brett, A., Brett, S., Dundas, R., Enright, J. & Gonzalez-Beltran, A. N. & 18 others, Harris, C., Hinder, I., David Hughes, C., Knight, M., Mano, V., McMonagle, C., Mellor, D., Mohr, S., Marion, G., Matthews, L., McKendrick, I. J., Mark Pooley, C., Porphyre, T., Reeves, A., Townsend, E., Turner, R., Walton, J. & Reeve, R., 3 Oct 2022, In: Philosophical transactions. Series A, Mathematical, physical, and engineering sciences. 380, 2233, 23 p., 20210300.

Research output: Contribution to journal › Article › peer-review

Open Access

File

14 Citations (Scopus)

50 Downloads (Pure)

Field evaluation of diagnostic sensitivity (DSe) and specificity (DSp) of common tests for amoebic gill disease (AGD) and complex gill disease (CGD) in cultured Atlantic salmon (Salmo salar) in Scotland using Bayesian latent class models

Boerlage, A., Ashby, A., Eze, J., Gunn, G. & Reeves, A., Jul 2022, In: Preventive Veterinary Medicine. 204, 105654.

Research output: Contribution to journal › Article › peer-review

Open Access

File

1 Citation (Scopus)

59 Downloads (Pure)

Framework for a holistic view of biosecurity practice

Lamont (Stephen), K., 8 Jun 2022, (First published).

Research output: Contribution to conference › Poster › peer-review

File

44 Downloads (Pure)

Global Study: Participation in One Health Networks and Involvement in COVID-19 Response Activities

Streichert, L., Sepe, L., Jokelainen, P., Stroud, C., Berezowski, J. & Vilas, V. D., Mar 2022, The International Journal of Infectious Diseases: Supplement. Elsevier, Vol. 116. (International Journal of Infectious Diseases).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

File

32 Downloads (Pure)

Mitophylogenomics of the zoonotic fluke Echinostoma malayanum confirms it as a member of the genus Artyfechinostomum Lane, 1915 and illustrates the complexity of Echinostomatidae systematics

Pham, L. T. K., Saijuntha, W., Lawton, S. P. & Le, T. H., Mar 2022, In: Parasitology Research. 121, 3, p. 899-913 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

7 Citations (Scopus)

143 Downloads (Pure)

Output-based assessment of herd-level freedom from infection in endemic situations: Application of a Bayesian Hidden Markov model

van Roon, A. M., Madouasse, A., Toft, N., Santman-Berends, I. M. G. A., Gethmann, J., Eze, J., Humphry, R. W., Graham, D., Guelbenzu-Gonzalo, M., Nielen, M., More, S. J., Mercat, M., Fourichon, C., Sauter-Louis, C., Frössling, J., Ågren, E., Gunn, G. J., Henry, M. K. & van Schaik, G., Jul 2022, In: Preventive Veterinary Medicine. 204, 105662.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2 Citations (Scopus)

45 Downloads (Pure)

Participation in One Health Networks and Involvement in the COVID-19 Pandemic Response: A Global Study

Streichert, L. C., Sepe, L., Jokelainen, P., Stroud, C., Berezowski, J. & Del Rio Vilas, V., 24 Feb 2022, (First published) In: Frontiers in Public Health. 10, 830893.

Research output: Contribution to journal › Article › peer-review

Open Access

File

14 Citations (Scopus)

48 Downloads (Pure)

Phylogeny and potential virulence of cryptic clade Escherichia coli species complex isolates derived from an arable field trial

MacKenzie, K., Marshall, J., Wright, F., Gunn, G. & Holden, N., Jan 2022, In: Current Research in Microbial Sciences. 3, 100093.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2 Citations (Scopus)

109 Downloads (Pure)

Porcine reproductive and respiratory syndrome virus seroprevalence in Scottish finishing pigs between 2006 and 2018

Correia-Gomes, C., Duncan, A., Ward, A., Pearce, M., Eppink, L., Webster, G., McGowan, A. & Thomson, J., Apr 2022, In: The Veterinary Record. 190, 7, p. e349

Research output: Contribution to journal › Article › peer-review

Open Access

File

1 Citation (Scopus)

67 Downloads (Pure)

Quantifying changes in the British cattle movement network

Duncan, A. J., Reeves, A., Gunn, G. J. & Humphry, R. W., Jan 2022, In: Preventive Veterinary Medicine. 198, 105524.

Research output: Contribution to journal › Article › peer-review

Open Access

File

3 Citations (Scopus)

37 Downloads (Pure)

Targeted Design for a Specialist Working Population: How Farm Vets Inform the Design of Web-based Interventions That Support Coping.

Duncan, A. J. & Lamont (Stephen), K., 19 Sept 2022, Designing Interventions to Address Complex Societal Issues . Morton, S. (ed.). Routledge, p. 47-55

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

The colloquy between microbiota and the immune system in colon cancer: repercussions on the cancer therapy

Pal, S., Kumar Saini, A., Kaushal, A., Gupta, S., A Gaur, N., K Chhillar, A., K Sharma, A., Kumar Gupta, V. & V Saini, R., 8 Dec 2022, (First published) In: Current Pharmaceutical Design. 28, 43, p. 3478-3485 8 p.

Research output: Contribution to journal › Review article › peer-review

2 Citations (Scopus)

The Implementation Gap in Emerging Disease Risk Management in the Wildlife Trade

Stephen, C., Carmo, L. P., Montano Valle de Las Nieves, D., Friker, B., Sousa, F. M., Vidondo, B. & Berezowski, J., Oct 2022, In: Journal of Wildlife Diseases. 58, 4, p. 705-715 11 p.

Research output: Contribution to journal › Review article › peer-review

1 Citation (Scopus)

The mental health of NHS staff during the COVID-19 pandemic: Two-wave Scottish cohort study

De Kock, J. H., Latham, H. A., Cowden, R. G., Cullen, B., Narzisi, K., Jerdan, S., Muñoz, S. A., Leslie, S. J., McNamara, N., Boggon, A. & Humphry, R. W., 7 Jan 2022, (First published) In: BJPsych Open. 8, 1, e23.

Research output: Contribution to journal › Article › peer-review

Open Access

File

18 Citations (Scopus)

52 Downloads (Pure)

Therapeutic effects of oral administration of lytic Salmonella phages in a mouse model of non-typhoidal salmonellosis

Sukjoi, C., Buddhasiri, S., Tantibhadrasapa, A., Kaewsakhorn, T., Phothaworn, P., Nale, J. Y., Lopez-Garcia, A. V., AbuOun, M., Anjum, M. F., Malik, D. J., Galyov, E. E., Clokie, M. R. J., Korbsrisate, S. & Thiennimitr, P., 10 Oct 2022, (First published) In: Frontiers in Microbiology. 13, 955136.

Research output: Contribution to journal › Article › peer-review

Open Access

File

4 Citations (Scopus)

63 Downloads (Pure)

Toll like receptors and their evolution in the lymnaeid freshwater snail species Radix auricularia and Lymnaea stagnalis, key intermediate hosts for zoonotic trematodes

Juhász, A. & Lawton, S. P., Feb 2022, In: Developmental and Comparative Immunology. 127, 104297.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2 Citations (Scopus)

48 Downloads (Pure)

Understanding the perception of biosecurity measures surrounding sheep scab disease and round worm control on the island of Lewis and Harris.

Kyle, C., Burgess, S., Hardy, C., Lamont (Stephen), K., Bartley, D. & Melville, L., 28 Oct 2022, 16 p.

Research output: Book/Report/Policy Brief/Technical Brief › Research report

Open Access

File

58 Downloads (Pure)

2021

A cross-sectional survey to establish Theileria parva prevalence and vector control at the wildlife-livestock interface, Northern Tanzania

Allan, F. K., Sindoya, E., Adam, K. E., Byamungu, M., Lea, R. S., Lord, J. S., Mbata, G., Paxton, E., Mramba, F., Torr, S. J., Morrison, W. I., Handel, I., Morrison, L. J. & Auty, H. K., Nov 2021, In: Preventive Veterinary Medicine. 196, 105491.

Research output: Contribution to journal › Article › peer-review

Open Access

File

5 Citations (Scopus)

69 Downloads (Pure)

Adding value to food chain information: using data on pig welfare and antimicrobial use on‑farm to predict meat inspection outcomes

Pessoa, J., McAloon, C., Rodrigues da Costa, M., Manzanilla, E. G., Norton, T. & Boyle, L. A., 14 Oct 2021, (First published) In: Porcine Health Management. 7, 9 p., 55.

Research output: Contribution to journal › Article › peer-review

Open Access

File

7 Citations (Scopus)

49 Downloads (Pure)

A modelling framework for the prediction of herd-level probability of infection from longitudinal data

Madouasse, A., Mercat, M., van Roon, A. M., Graham, D. A., Guelbenzu-Gonzalo, M., Santman-Berends, I., van Schaik, G., Nielen, M., Frossling, J., Agren, E., Humphry, R., Eze, J., Gunn, G., Henry, M., Gethmann, J., More, S. J., Toft, N. & Fourichon, C., 1 Sept 2021, (First published) bioRxiv, 31 p. (ver. 6 peer-reviewed and recommended by PCI Animal Science).

Research output: Working paper/Preprint › Preprint

Open Access

File

54 Downloads (Pure)

An exploration of antimicrobial prescribing practice and prescribing intention of vets for livestock and GPS in rural practices in Scotland P2019

Stephen, K., Clarke, G. A. & Baughan, J., 9 Jun 2021.

Research output: Contribution to conference › Poster › peer-review

Open Access

File

47 Downloads (Pure)

Assessment of the Effectiveness of Pre-harvest Meat Safety Interventions to Control Foodborne Pathogens in Broilers: a Systematic Review

Pessoa, J., Rodrigues da Costa, M., Nesbakken, T., Meemken, D. & RIBMINS Cost Action, Jun 2021, In: Current Clinical Microbiology Reports. 8, 2, p. 21-30 10 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

File

10 Citations (Scopus)

49 Downloads (Pure)

Centre for Epidemiology and Planetary Health (CEPH)

Research output

Search results