Photo of David Marshall
  • West Mains Road, Kings Buildings

    EH9 3JG Edinburgh

    United Kingdom

1980 …2019
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Research Output 1980 2019

2019
4 Citations (Scopus)

BrAPI - an application programming interface for plant breeding applications

Selby, P., Abbeloos, R., Backlund, J. E., Basterrechea Salido, M., Bauchet, G., Benites-Alfaro, O., Birkett, C., Calaminos, V. C., Carceller, P., Cornut, G., Vasques Costa, B., Edwards, J. D., Finkers, R., Gao, S. Y., Ghaffar, M., Glaser, P., Guignon, V., Hok, P., Kilian, A., König, P. & 30 others, Lagare, J. E. B., Lange, M., Laporte, M-A., Larmande, P., LeBauer, D., Lyon, D., Marshall, D., Matthews, D., Milne, I., Mistry, N., Morales, N., Mueller, L., Neveu, P., Papoutsoglou, E., Pearce, B., Perez-Masias, I., Pommier, C., Ramirez-Gonzalez, R. H., Rathore, A., Raquel, A. M., Raubach, S., Rife, T., Robbins, K., Rouard, M., Sarma, C., Scholz, U., Sempéré, G., Shaw, P., Simon, R. & Soldevilla, N., 15 Oct 2019, In : Bioinformatics (Oxford, England). 35, 20, p. 4147-4155 9 p., btz190.

Research output: Contribution to journalArticle

Open Access
File
Application programming interfaces (API)
Breeding
Programming
Specifications
Plant Breeding
3 Citations (Scopus)

RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family

Daly, P., McClellan, C., Maluk, M., Oakey, H., Lapierre, C., Waugh, R., Stephens, J., Marshall, D., Barakate, A., Tsuji, Y., Goeminne, G., Vanholme, R., Boerjan, W., Ralph, J. & Halpin, C., Mar 2019, In : Plant Biotechnology Journal. 17, 3, p. 594-607 14 p.

Research output: Contribution to journalArticle

Open Access
caffeate O-methyltransferase
Lignin
Hordeum
RNA Interference
lignin
2017
6 Citations (Scopus)

Germinate 3: Development of a common platform to support the distribution of experimental data on crop wild relatives

Shaw, P. D., Raubach, S., Hearne, S. J., Dreher, K., Bryan, G., McKenzie, G., Milne, I., Stephen, G. & Marshall, D. F., 16 Jun 2017, In : Crop Science. 57, 3, p. 1259-1273 15 p.

Research output: Contribution to journalArticle

Open Access
wild relatives
Zea mays subsp. mays
researchers
Hordeum
helium
2016
18 Citations (Scopus)

Analytical and decision support tools for genomics-assisted breeding

Varshney, R. K., Singh, V. K., Hickey, J. M., Xun, X., Marshall, D. F., Wang, J., Edwards, D. & Ribaut, J. M., 1 Apr 2016, In : Trends in Plant Science. 21, 4, p. 354-363 10 p.

Research output: Contribution to journalReview article

Open Access
genomics
breeding
breeding lines
plant breeding
phenotype
8 Citations (Scopus)

An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly

Velmurugan, J., Mollison, E., Barth, S., Marshall, D., Milne, L., Creevey, C. J., Lynch, B., Meally, H., McCabe, M. & Milbourne, D., 1 Jul 2016, In : Annals of Botany. 118, 1, p. 71-87 17 p.

Research output: Contribution to journalArticle

genome assembly
Lolium perenne
genotyping
chromosome mapping
genome
11 Citations (Scopus)

Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

Milne, I., Bayer, M., Stephen, G., Cardle, L. & Marshall, D., 2016, Plant Bioinformatics: Methods and Protocols. Edwards, D. (ed.). Springer, Vol. 1374. p. 253-68 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tablets
Audiovisual Aids
Single Nucleotide Polymorphism
2015
15 Citations (Scopus)

An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

Ribeiro, A., Golicz, A., Hackett, C. A., Milne, I., Stephen, G., Marshall, D., Flavell, A. J. & Bayer, M., 11 Nov 2015, In : BMC Bioinformatics. 16, 382.

Research output: Contribution to journalArticle

Open Access
Single nucleotide Polymorphism
Nucleotides
Eukaryota
Polymorphism
False Positive
20 Citations (Scopus)

Evolutionary dynamics of the cellulose synthase gene superfamily in grasses

Schwerdt, J. G., MacKenzie, K., Wright, F., Oehme, D., Wagner, J. M., Harvey, A. J., Shirley, N. J., Burton, R. A., Schreiber, M., Halpin, C., Zimmer, J., Marshall, D. F., Waugh, R. & Fincher, G. B., Jul 2015, In : Plant Physiology. 168, p. 968-983

Research output: Contribution to journalArticle

Open Access
cellulose synthase
Poaceae
grasses
Genes
genes
2014
3 Citations (Scopus)

Genome-Tagged Amplification (GTA): a PCR-based method to prepare sample-tagged amplicons from hundreds of individuals for next generation sequencing

Ho, T., Cardle, L., Xu, X., Bayer, M., Prince, K. S. J., Mutava, R. N., Marshall, D. F. & Syed, N., Apr 2014, In : Plant Breeding. 34, 3, p. 977-988

Research output: Contribution to journalArticle

Genome
Polymerase Chain Reaction
genome
DNA
Population Genetics
13 Citations (Scopus)

Helium: visualization of large scale plant pedigrees

Shaw, P. D., Graham, M., Kennedy, J., Milne, I. & Marshall, D. F., 1 Aug 2014, In : BMC Bioinformatics. 15, 259.

Research output: Contribution to journalArticle

Open Access
Pedigree
Helium
Visualization
Climate change
Integrate
1 Citation (Scopus)

In silico identification and characterization of conserved plant microRNAs in barley

Wu, X., Hornyik, C., Bayer, M., Marshall, D., Waugh, R. & Zhang, R., 2014, In : Central European Journal of Biology. 9, 9, p. 841-852 12 p.

Research output: Contribution to journalArticle

Open Access
Hordeum
MicroRNAs
microRNA
Computer Simulation
barley
25 Citations (Scopus)

The barley genome sequence assembly reveals three additional members of the CslF (1,3;1,4)-β-glucan synthase gene family

Schreiber, M., Wright, F., MacKenzie, K., Hedley, P. E., Schwerdt, J. G., Little, A., Burton, R. A., Fincher, G. B., Marshall, D., Waugh, R. & Halpin, C., 2014, In : PLoS ONE. 9, 3, e90888.

Research output: Contribution to journalArticle

Open Access
genome assembly
glucans
Hordeum
Genes
barley
17 Citations (Scopus)

The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression

Baker, K., Bayer, M., Cook, N., Dreißig, S., Dhillon, T., Russell, J., Hedley, P. E., Morris, J., Ramsay, L., Colas, I., Waugh, R., Steffenson, B., Milne, I., Stephen, G., Marshall, D. & Flavell, A. J., Sep 2014, In : Plant Journal. 79, 6, p. 981-992

Research output: Contribution to journalArticle

Open Access
Hordeum
barley
Gene Expression
gene expression
Genome
30 Citations (Scopus)

The use of genotyping by sequencing in blackcurrant (Ribes nigrum): developing high-resolution linkage maps in species without reference genome sequences

Russell, J., Hackett, C., Hedley, P., Liu, H., Milne, L., Bayer, M., Marshall, D., Jorgensen, L., Gordon, S. & Brennan, R., Apr 2014, In : Molecular Breeding. 33, 4, p. 835-849

Research output: Contribution to journalArticle

Ribes
Ribes nigrum
black currants
genotyping
chromosome mapping
2013
112 Citations (Scopus)

Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps

Sharma, S. K., Bolser, D., de Boer, J., Sønderkær, M., Amoros, W., Carboni, M. F., D'Ambrosio, J. M., de la Cruz, G., Di Genova, A., Douches, D. S., Eguiluz, M., Guo, X., Guzman, F., Hackett, C. A., Hamilton, J. P., Li, G., Li, Y., Lozano, R., Maass, A., Marshall, D. & 25 others, Martinez, D., McLean, K., Mejía, N., Milne, L., Munive, S., Nagy, I., Ponce, O., Ramirez, M., Simon, R., Thomson, S. J., Torres, Y., Waugh, R., Zhang, Z., Huang, S., Visser, R. G. F., Bachem, C. W. B., Sagredo, B., Feingold, S. E., Orjeda, G., Veilleux, R. E., Bonierbale, M., Jacobs, J. M. E., Milbourne, D., Martin, D. M. A. & Bryan, G. J., 6 Nov 2013, In : G3: Genes, Genomes, Genetics. 3, 11, p. 2031-47 17 p.

Research output: Contribution to journalArticle

Open Access
File
Solanum tuberosum
Chromosomes
Genome
Lycopersicon esculentum
Diploidy
72 Citations (Scopus)

Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing

Zhang, R., Marshall, D., Bryan, G. J. & Hornyik, C., 21 Feb 2013, In : PLoS ONE. 8, 2, e57233.

Research output: Contribution to journalArticle

Open Access
Solanum tuberosum
MicroRNAs
microRNA
Transcriptome
transcriptome
386 Citations (Scopus)

Using Tablet for visual exploration of second-generation sequencing data

Milne, I., Stephen, G., Bayer, M., Cock, P. J. A., Pritchard, L., Cardle, L., Shaw, P. D. & Marshall, D., Mar 2013, In : Briefings in Bioinformatics. 14, 2, p. 193-202 10 p.

Research output: Contribution to journalArticle

Tablets
Visualization
Quality assurance
Proteins
Protein Biosynthesis
2012
241 Citations (Scopus)

Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley

Comadran, J., Kilian, B., Russell, J., Ramsay, L., Stein, N., Ganal, M., Shaw, P., Bayer, M., Thomas, W., Marshall, D., Hedley, P., Tondelli, A., Pecchioni, N., Francia, E., Korzun, V., Walther, A. & Waugh, R., Nov 2012, In : Nature Genetics. 44, p. 1388-1392

Research output: Contribution to journalArticle

Antirrhinum
Hordeum
Habits
Middle East
Growth
2011
2 Citations (Scopus)

A robust statistical method for association-based eQTL analysis

Jiang, N., Wang, M., Jia, T., Wang, L., Leach, L., Hackett, C., Marshall, D. & Luo, Z., 2011, In : PLoS ONE. 6, 8, e23192.

Research output: Contribution to journalArticle

Open Access
Statistical methods
statistical analysis
Genes
seed stratification
Genome-Wide Association Study
Synteny
Bacterial Artificial Chromosomes
Polymerase Chain Reaction
Sequence Tagged Sites
Oryza
23 Citations (Scopus)

Comparative visualization of genetic and physical maps with Strudel

Bayer, M., Milne, I., Stephen, G., Shaw, P., Cardle, L., Wright, F. & Marshall, D., 1 May 2011, In : Bioinformatics (Oxford, England). 27, 9, p. 1307-8 2 p.

Research output: Contribution to journalArticle

Open Access
Synteny
Comparative Genomics
Data visualization
Data Visualization
Linux
1005 Citations (Scopus)

Genome sequence and analysis of the tuber crop potato

Potato Genome Sequencing Consortium, 10 Jul 2011, In : Nature. 475, 7355, p. 189-95 7 p.

Research output: Contribution to journalArticle

Open Access
Solanum tuberosum
Sequence Analysis
Genome
Clone Cells
Tissue Expansion
7 Citations (Scopus)

Highly parallel gene-to-BAC addressing using microarrays

Liu, H., McNicol, J., Bayer, M., Morris, J. A., Cardle, L., Marshall, D. F., Schulte, D., Stein, N., Shi, B-J., Taudien, S., Waugh, R. & Hedley, P. E., Mar 2011, In : BioTechniques. 50, 3, p. 165-74 10 p.

Research output: Contribution to journalArticle

Open Access
Microarrays
Genes
Genome
Costs and Cost Analysis
Hordeum
157 Citations (Scopus)

INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1

Ramsay, L., Comadran, J., Druka, A., Marshall, D. F., Thomas, W. T. B., Macaulay, M., MacKenzie, K., Simpson, C., Fuller, J., Bonar, N., Hayes, P. M., Lundqvist, U., Franckowiak, J. D., Close, T. J., Muehlbauer, G. J. & Waugh, R., 9 Jan 2011, In : European Journal of Medical Genetics. 43, p. 169-172

Research output: Contribution to journalArticle

Hordeum
Zea mays
Fertility
Phenotype
Seeds
21 Citations (Scopus)

Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco

Barakate, A., Stephens, J., Goldie, A., Hunter, W. N., Marshall, D., Hancock, R. D., Lapierre, C., Morreel, K., Boerjan, W. & Halpin, C., Dec 2011, In : Plant Cell. 23, 12, p. 4492-506 15 p.

Research output: Contribution to journalArticle

sinapyl alcohol
Lignin
alcohol dehydrogenase
Tobacco
cinnamyl alcohol dehydrogenase
2010
56 Citations (Scopus)

An eQTL analysis of partial resistance to Puccinia hordei in barley

Chen, X., Hackett, C. A., Niks, R. E., Hedley, P. E., Booth, C., Druka, A., Marcel, T. C., Vels, A., Bayer, M., Milne, I., Morris, J., Ramsay, L., Marshall, D., Cardle, L. & Waugh, R., 6 Jan 2010, In : PLoS ONE. 5, 1, e8598.

Research output: Contribution to journalArticle

Open Access
Puccinia hordei
Quantitative Trait Loci
Hordeum
quantitative trait loci
Genes
12 Citations (Scopus)

Cereal variety identification using MALDI-TOF mass spectrometry SNP genotyping

Pattemore, J. A., Rice, N., Marshall, D. F., Waugh, R. & Henry, R. J., Nov 2010, In : Journal of Cereal Science. 52, 3, p. 356-361 6 p.

Research output: Contribution to journalArticle

matrix-assisted laser desorption-ionization mass spectrometry
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
genotyping
Single Nucleotide Polymorphism
Mass spectrometry
7 Citations (Scopus)

Exploiting induced variation to dissect quantitative traits in barley

Druka, A., Franckowiak, J., Lundqvist, U., Bonar, N., Alexander, J., Guzy-Wrobelska, J., Ramsay, L., Druka, I., Grant, I., Macaulay, M., Vendramin, V., Shahinnia, F., Radovic, S., Houston, K., Harrap, D., Cardle, L., Marshall, D., Morgante, M., Stein, N. & Waugh, R., Apr 2010, In : Biochemical Society Transactions. 38, 2, p. 683-8 6 p.

Research output: Contribution to journalReview article

Hordeum
Genes
Quantitative Trait Loci
Cloning
Organism Cloning
99 Citations (Scopus)

Flapjack--graphical genotype visualization

Milne, I., Shaw, P., Stephen, G., Bayer, M., Cardle, L., Thomas, W. T. B., Flavell, A. J. & Marshall, D., 15 Dec 2010, In : Bioinformatics (Oxford, England). 26, 24, p. 3133-4 2 p.

Research output: Contribution to journalArticle

Open Access
Quantitative Trait Loci
Chromosomes
Nucleotides
Polymorphism
Genotype
176 Citations (Scopus)

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome

Cockram, J., White, J., Zuluaga, DL., Smith, D., Comadran, J., Macaulay, M., Lou, Z., Kearsey, MJ., Werner, P., Harrap, D., Tapsell, C., H, L., Hedley, PE., Stein, N., Schulte, DE., Steuernagel, B., Marshall, D., Thomas, WBT., L, R., Mackay, I. & 1 others, Balding, D., 14 Dec 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 50, p. 21611-21616 6 p.

Research output: Contribution to journalArticle

Anthocyanins
Genome-Wide Association Study
Hordeum
Genome
Helix-Loop-Helix Motifs
408 Citations (Scopus)

Tablet--next generation sequence assembly visualization

Milne, I., Bayer, M., Cardle, L., Shaw, P., Stephen, G., Wright, F. & Marshall, D., 1 Feb 2010, In : Bioinformatics (Oxford, England). 26, 3, p. 401-2 2 p.

Research output: Contribution to journalArticle

Open Access
Tablets
Visualization
Apple
Data visualization
Data Visualization
98 Citations (Scopus)

The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis

Jing, R., Vershinin, A., Grzebyta, J., Shaw, P., Smýkal, P., Marshall, D., Ambrose, M. J., Ellis, T. H. N. & Flavell, A. J., 15 Feb 2010, In : BMC Evolutionary Biology. 10, 44.

Research output: Contribution to journalArticle

Open Access
Pisum
retrotransposons
germplasm
peas
polymorphism
18 Citations (Scopus)

Whole-genome association mapping in elite inbred crop varietiesThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

Francki, M., Waugh, R., Marshall, D., Thomas, B., Comadran, J., Russell, J., Close, T., Stein, N., Hayes, P., Muehlbauer, G., Cockram, J., O’Sullivan, D., Mackay, I., Flavell, A., AGOUEB, BarleyCAP & Ramsay, L., Nov 2010, In : Genome. 53, 11, p. 967-972

Research output: Contribution to journalArticle

Chromosome Mapping
Brassica
Genetic Models
oilseeds
Hordeum
2009
430 Citations (Scopus)

Development and implementation of high-throughput SNP genotyping in barley

Close, T. J., Bhat, P. R., Lonardi, S., Wu, Y., Rostoks, N., Ramsay, L., Druka, A., Stein, N., Svensson, J. T., Wanamaker, S., Bozdag, S., Roose, M. L., Moscou, M. J., Chao, S., Varshney, R. K., Szűcs, P., Sato, K., Hayes, P. M., Matthews, D. E., Kleinhofs, A. & 8 others, Muehlbauer, G. J., DeYoung, J., Marshall, D. F., Madishetty, K., Fenton, R. D., Condamine, P., Graner, A. & Waugh, R., 4 Dec 2009, In : BMC Genomics. 10, 582.

Research output: Contribution to journalArticle

Open Access
Hordeum
Single Nucleotide Polymorphism
Genetic Loci
Organism Cloning
Genotype
429 Citations (Scopus)

TOPALi v2: A rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops

Milne, I., Lindner, D., Bayer, M., Husmeier, D., Mcguire, G., Marshall, D. F. & Wright, F., Jan 2009, In : Bioinformatics. 25, 1, p. 126-127 2 p.

Research output: Contribution to journalArticle

Open Access
Alignment
Maximum Likelihood
Substitution
Computing Methodologies
Maximum likelihood
2008
39 Citations (Scopus)

Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley

Druka, A., Potokina, E., Luo, Z., Bonar, N., Druka, I., Zhang, L., Marshall, D. F., Steffenson, B. J., Close, T. J., Wise, R. P., Kleinhofs, A., Williams, R. W., Kearsey, M. J. & Waugh, R., Jul 2008, In : Theoretical And Applied Genetics. 117, 2, p. 261-272

Research output: Contribution to journalArticle

Puccinia graminis
stem rust
Hordeum
Triticum
barley
98 Citations (Scopus)

Intronic noncoding RNAs and splicing

Brown, J. W. S., Marshall, D. F. & Echeverria, M., Jul 2008, In : Trends in Plant Science. 13, 7, p. 335-342 8 p.

Research output: Contribution to journalReview article

RNA
microRNA
ribonucleoproteins
introns
yeasts
3 Citations (Scopus)

The 172-kb genomic DNA region of the O. rufipogon yld1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica

Song, B-K., Hein, I., Druka, A., Waugh, R., Marshall, D., Nadarajah, K., Yap, S-J. & Ratnam, W., Jul 2008, In : Funct Integr Genomics. 9, 1, p. 97-108

Research output: Contribution to journalArticle

sequence analysis
Oryza rufipogon
genomics
wild rice
loci
7 Citations (Scopus)
3 Downloads (Pure)

The generation challenge programme platform: semantic standards and workbench for crop science

Bruskiewich, R., Senger, M., Davenport, G., Ruiz, M., Rouard, M., Hazekamp, T., Takeya, M., Doi, K., Satoh, K., Costa, M., Simon, R., Balaji, J., Akintunde, A., Mauleon, R., Wanchana, S., Shah, T., Anacleto, M., Portugal, A., Ulat, V. J., Thongjuea, S. & 37 others, Braak, K., Ritter, S., Dereeper, A., Skofic, M., Rojas, E., Martins, N., Pappas, G., Alamban, R., Almodiel, R., Barboza, L. H., Detras, J., Manansala, K., Mendoza, M. J., Morales, J., Peralta, B., Valerio, R., Zhang, Y., Gregorio, S., Hermocilla, J., Echavez, M., Yap, J. M., Farmer, A., Schiltz, G., Lee, J., Casstevens, T., Jaiswal, P., Meintjes, A., Wilkinson, M., Good, B., Wagner, J., Morris, J., Marshall, D., Collins, A., Kikuchi, S., Metz, T., McLaren, G. & Van Hintum, T., 2008, In : International Journal of Plant Genomics. 2008, 6 p., 369601.

Research output: Contribution to journalArticle

Open Access
File
Semantics
plant breeding
crops
Research
program crops
22 Citations (Scopus)

Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork

Druka, A., Druka, I., Centeno, A. G., Li, H., Sun, Z., Thomas, W. TB., Bonar, N., Steffenson, B. J., Ullrich, S. E., Kleinhofs, A., Wise, R. P., Close, T. J., Potokina, E., Luo, Z., Wagner, C., Schweizer, G. F., Marshall, D. F., Kearsey, M. J., Williams, R. W. & Waugh, R., 2008, In : BMC Genetics. 9, 1

Research output: Contribution to journalArticle

Open Access
Hordeum
Genotype
Genomics
Gene Expression
Research
2007
25 Citations (Scopus)

Molecular barley breeding

Rae, S. J., Macaulay, M., Ramsay, L., Leigh, F., Matthews, D., O'Sullivan, D. M., Donini, P., Morris, P. C., Powell, W., Marshall, D. F., Waugh, R. & Thomas, W. T. B., 2007, In : Euphytica. 158, 3, p. 295-303 9 p.

Research output: Contribution to journalArticle

2006
33 Citations (Scopus)

A hAT superfamily transposase recruited by the cereal grass genome

Muehlbauer, G. J., Bhau, B. S., Syed, N. H., Heinen, S., Cho, S., Marshall, D., Pateyron, S., Buisine, N., Chalhoub, B. & Flavell, A. J., Jun 2006, In : Molecular Genetics and Genomics. 275, 6, p. 553-563 11 p.

Research output: Contribution to journalArticle

Transposases
Poaceae
Genome
Triticum
Hordeum
108 Citations (Scopus)

An atlas of gene expression from seed to seed through barley development

Druka, A., Muehlbauer, G., Druka, I., Caldo, R., Baumann, U., Rostoks, N., Schreiber, A., Wise, R., Close, T., Kleinhofs, A., Graner, A., Schulman, A., Langridge, P., Sato, K., Hayes, P., McNicol, J., Marshall, D. & Waugh, R., Mar 2006, In : Functional and Integrative Genomics. 6, 3, p. 202-211

Research output: Contribution to journalArticle

barley
gene expression
seeds
genes
transcriptome
242 Citations (Scopus)

Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties

Rostoks, N., Ramsay, L., MacKenzie, K., Cardle, L., Bhat, P. R., Roose, M. L., Svensson, J. T., Stein, N., Varshney, R. K., Marshall, D. F., Graner, A., Close, T. J. & Waugh, R., 5 Dec 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 49, p. 18656-18661 6 p.

Research output: Contribution to journalArticle

outcrossing
linkage disequilibrium
chromosome mapping
genome
cultivars
2005
33 Citations (Scopus)

A comparative analysis of transcript abundance using SAGE and Affymetrix arrays

Ibrahim, A. F. M., Hedley, P. E., Cardle, L., Kruger, W., Marshall, D. F., Muehlbauer, G. J. & Waugh, R., Jul 2005, In : Functional and Integrative Genomics. 5, 3, p. 163-174 12 p.

Research output: Contribution to journalArticle

Gene Expression
Gene Expression Profiling
Hordeum
Libraries
Embryonic Structures
57 Citations (Scopus)

Arabidopsis nucleolar protein database (AtNoPDB)

Brown, J. W. S., Shaw, P. J., Shaw, P. & Marshall, D. F., 1 Jan 2005, In : Nucleic Acids Research. 33, DATABASE ISS.

Research output: Contribution to journalArticle

Open Access
Arabidopsis Proteins
Protein Databases
Nuclear Proteins
Proteome
Arabidopsis
19 Citations (Scopus)

Characterisation and functional analysis of two barley caleosins expressed during barley caryopsis development

Liu, H., Hedley, P., Cardle, L., Wright, K. M., Hein, I., Marshall, D. & Waugh, R., Jun 2005, In : Planta. 221, 4, p. 513-522 10 p.

Research output: Contribution to journalArticle

lipid bodies
Hordeum
barley
body protein
fruits
219 Citations (Scopus)

Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress

Rostoks, N., Mudie, S., Cardle, L., Russell, J., Ramsay, L., Booth, A., Svensson, J. T., Wanamaker, S. I., Walia, H., Rodriguez, E. M., Hedley, P. E., Liu, H., Morris, J., Close, T. J., Marshall, D. F. & Waugh, R., Dec 2005, In : Molecular Genetics and Genomics. 274, 5, p. 515-527 13 p.

Research output: Contribution to journalArticle

Hordeum
Single Nucleotide Polymorphism
Genome
Genes
Gene Order
25 Citations (Scopus)

GERMINATE. a generic database for integrating genotypic and phenotypic information for plant genetic resource collections

Lee, J. M., Davenport, G. F., Marshall, D., Ellis, T. H. N., Ambrose, M. J., Dicks, J., van Hintum, T. J. L. & Flavell, A. J., Oct 2005, In : Plant Physiology. 139, 2, p. 619-31 13 p.

Research output: Contribution to journalArticle

plant genetic resources
Databases
genomics
Genomics
Technology
119 Citations (Scopus)

Single-feature polymorphism discovery in the barley transcriptome

Rostoks, N., Borevitz, J. O., Hedley, P. E., Russell, J., Mudie, S., Morris, J., Cardle, L., Marshall, D. F. & Waugh, R., May 2005, In : Genome Biology. 6, 6, R54.

Research output: Contribution to journalArticle

Open Access
Hordeum
Transcriptome
transcriptome
barley
single nucleotide polymorphism