Ian Mackay

Prof

  • West Mains Road, Kings Buildings

    EH9 3JG Edinburgh

    United Kingdom

1993 …2019

Research output per year

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2019

A large-scale pedigree resource of wheat reveals evidence for adaptation and selection by breeders

Fradgley, N., Gardner, K., Cockram, J., Elderfield, J., Hickey, J., Howell, P., Jackson, R. & Mackay, IM., 28 Feb 2019, In : PLoS Biology. 17, 2, 20 p., e3000071.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

The effects of training population design on genomic prediction accuracy in wheat

Edwards, S., Buntjer, J., Jackson, R., Bentley, A., Lage, J., Byrne, E., Burt, C., Jack, P., Berry, S., Flatman, E., Poupard, B., Smith, S., Hayes, C., Gaynor, C., Gorjanc, G., Howell, P., Ober, E., Mackay, I. & Hickey, J., Jul 2019, In : Theoretical and Applied Genetics. 132, 7, p. 1943–1952 10 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
3 Downloads (Pure)
2018

Assessing European wheat sensitivities to Parastagonospora nodorum necrotrophic effectors and fine-mapping the Snn3-B1 locus conferring sensitivity to the effector SnTox3

Downie, R., Bouvet, L., Furuki, E., Gosman, N., Gardner, K., Mackay, I., Campos Mantello, C., Mellers, G., Phan, H., Rose, G., Tan, K-C., Oliver, R. & Cockram, J., 4 Jul 2018, In : Frontiers in Plant Science. 9:881, 12 p.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Functional mapping of quantitative trait loci (QTLs) associated with plant performance in a wheat MAGIC mapping population

Camargo, A., Mackay, I., Mott, R., Han, J., Doonan, J., Askew, K., Corke, F., Williams, K. & Bentley, A., 9 Jul 2018, In : Frontiers in Plant Science. 9, 15 p., 887.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Genomic index selection provides a pragmatic framework for setting and refining multi-objective breeding targets in Miscanthus

Slavov, G., Davey, C., Bosch, M., RObson, P., Donnison, I. & Mackay, I., 23 Oct 2018, In : Annals of Botany. XX, p. 1-9 9 p.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)
2017

Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery

Implementing Genomic Selection in CGIAR Breeding Programs Workshop Participants, 1 Sep 2017, In : Nature Genetics. 49, 9, p. 1297 - 1303 7 p.

Research output: Contribution to journalArticle

Open Access
File
61 Citations (Scopus)
18 Downloads (Pure)

Starch granule morphology in oat endosperm

Saccomanno, B., Chambers, A., Hayes, A., Mackay, IM., McWilliams, S. & Trafford, K., 2017, In : Journal of Cereal Science. 73, p. 46-54

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)
2016
Open Access
32 Citations (Scopus)

Analysis of allelic imbalance in rice hybrids under water stress and association of asymmetrically expressed genes with drought-response QTLs

Ereful, NC., Liu, L-Y., Tsai, E., Kao, S-M., Dixit, S., Mauleon, R., Malabanan, K., Thomson, M., Laurena, A., Lee, D., Mackay, I., Greenland, A., Powell, W. & Leung, H., 2016, In : Rice. 9, 50, 15 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
12 Downloads (Pure)

Determining phenological patterns associated with the onset of senescence in a wheat MAGIC mapping population

Camargo, A., Mott, R., Gardner, K., Mackay, I., Corke, F., Doonan, J., Kim, J. & Bentley, A., 2016, In : Frontiers in Plant Science. 7, p. 12

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Maximizing the potential of multi-parental crop populations

Ladejobi, O., Elderfield, J., Gardner, K., Gaynor, C., Hickey, J., Hibberd, J., Mackay, I. & Bentley, A., Dec 2016, In : Applied and Translational Genomics. 11, p. 9-17

Research output: Contribution to journalArticle

Open Access
15 Citations (Scopus)

SSR markers indicate a common origin of self-pollinating dwarf coconut in South-East Asia under domestication

Perera, L., Baudouin, L. & Mackay, I., Nov 2016, In : Scientia Horticulturae. 211, p. 255-262

Research output: Contribution to journalArticle

5 Citations (Scopus)

Using genetic distance to infer the accuracy of genomic prediction

Scutari, M., Mackay, I. & Balding, D., 2 Sep 2016, In : PLoS Genetics. 12, 9, 19 p., e1006288.

Research output: Contribution to journalArticle

Open Access
25 Citations (Scopus)
2015

Differentially penalized regression to predict agronomic traits from metabolites and markers

Ward, J., Rakszegi, M., Bedő, Z., Shewry, P. & Mackay, I., 26 Feb 2015, In : BMC Genetics. 16, 19, 7 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Efficiently tracking selection in a multiparental population: the case of earliness in wheat

Thépot, S., Restoux, G., Goldringer, I., Hospital, F., Gouache, D., Mackay, I. & Enjalbert, J., 2015, In : Genetics. 199, p. 609-623

Research output: Contribution to journalArticle

23 Citations (Scopus)

Fine-mapping the wheat Snn1 locus conferring sensitivity 1 to the Parastagonospora nodorum necrotrophic effector SnTox1 using an eight founder multi-parent advanced generation intercross population

Cockram, J., Scuderi, A., Barber, T., Furuki, E., Gardner, K., Gosman, N., Kowalczyk, R., Phan, H., Rose, G. A., Tan, K-C., Oliver, R. & Mackay, I., 1 Nov 2015, In : G3: Genes, Genomes, Genetics. 5, p. 2257-2266

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)

GplusE: beyond genomic selection

Mackay, I., Ober, E. & Hickey, J., 25 Mar 2015, In : Food and Energy Security. 4, 1, p. 25-35

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

Implications of using genomic prediction within a high density SNP dataset to predict DUS traits in barley

Mackay, I. & Jones, H., Dec 2015, In : Theoretical and Applied Genetics. 128, 12, p. 2461–2470

Research output: Contribution to journalArticle

4 Citations (Scopus)
2014

Agro-morphological variation and nutritional qualitative trait screening among field bean (Vicia faba L. var minor)

Khamassi, K., Mackay, I., Ali, M., Rezgui, S., O’Sullivan, D. & Ben Jeddi, F., 16 Jun 2014, In : Legume Genomics and Genetics. 5, p. 7-24

Research output: Contribution to journalArticle

Open Access

An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation

Mackay, I. J., Bansept-Basler, P., Barber, T., Bentley, A. R., Cockram, J., Gosman, N., Greenland, A. J., Horsnell, R., Howells, R., O'Sullivan, D. M., Rose, G. A. & Howell, P. J., 18 Sep 2014, In : G3: Genes, Genomes, Genetics. 4, 9, p. 1603-10 8 p.

Research output: Contribution to journalArticle

Open Access
87 Citations (Scopus)

Applying association mapping and genomic selection to the dissection of key traits in elite European wheat

Bentley, A., Scutari, M., Gosman, N., Faure, S., Bedford, F., Howell, P., Cockram, J., Rose, G., Barber, T., Irigoyen, J., Horsnell, R., Pumfrey, C., Winnie, E., Schacht, J., Beauchêne, K., Praud, S., Greenland, A., Balding, D. & Mackay, I., Dec 2014, In : TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 127, 12, p. 2619-33 15 p.

Research output: Contribution to journalArticle

50 Citations (Scopus)

Multiple quantitative trait analysis using Bayesian networks

Scutari, M., Howell, P., Balding, D. J. & Mackay, I., Sep 2014, In : Genetics. 198, 1, p. 129-137 9 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)
2013

Evaluation of the use of high-density SNP genotyping to implement UPOV Model 2 for DUS testing in barley

Jones, H., Norris, C., Smith, D., Cockram, J., Lee, D., O'Sullivan, D. M. & Mackay, I., Apr 2013, In : TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 126, 4, p. 901-911 11 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Genome-wide analysis of allele specific expression imbalance and copy number variation in rice (Oryza sativa L.) under normal and drought conditions

Ereful, N. C., Malabanan, K., Thomson, M., Merca, FE., Laurena, A., Lee, D., Mackay, I. & Leung, H., 2013, In : Philippine Journal of Crop Science.

Research output: Contribution to journalArticle

Haplotype dictionary for the Rht-1 loci in wheat

Wilhelm, E. P., Mackay, I. J., Saville, R. J., Korolev, A. V., Balfourier, F., Greenland, A. J., Boulton, M. I. & Powell, W., Jul 2013, In : TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 126, 7, p. 1733-47 15 p.

Research output: Contribution to journalArticle

32 Citations (Scopus)

Improving the efficiency of genomic selection

Scutari, M., Mackay, I. & Balding, D., Aug 2013, In : Statistical Applications in Genetics and Molecular Biology. 12, 4, p. 517-27 11 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Remnant genetic diversity detected in an ancient crop: Triticum dicoccon Schrank landraces from Asturias, Spain

Leigh, F. J., Oliveira, H. R., Mackay, I., Jones, H., Smith, L., Wolters, P., Charles, M., Jones, M., Powell, W., Brown, T. A. & Jones, G., Jan 2013, In : Genetic Resources and Crop Evolution. 60, 1, p. 355-365 11 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Rht-1 and Ppd-D1 associations with height, GA sensitivity, and days to heading in a worldwide bread wheat collection

Wilhelm, E. P., Boulton, M. I., Al-Kaff, N., Balfourier, F., Bordes, J., Greenland, A., Powell, W. & Mackay, I., Sep 2013, In : TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 126, 9, p. 2233-2243 11 p.

Research output: Contribution to journalArticle

32 Citations (Scopus)

Short, natural, and extended photoperiod response in BC2F4 lines of bread wheat with different photoperiod-1 (Ppd-1) alleles

Bentley, A. R., Horsnell, R., Werner, C. P., Turner, A. S., Rose, G. A., Bedard, C., Howell, P., Wilhelm, E. P., Mackay, I. J., Howells, R. M., Greenland, A., Laurie, D. A. & Gosman, N., Apr 2013, In : Journal of Experimental Botany. 64, 7, p. 1783-93 11 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Using diversity of the chloroplast genome to examine evolutionary history of wheat species

Leigh, F., Mackay, I., Oliveira, H. R., Gosman, N., Horsnell, R., Jones, H., White, J., Powell, W. & Brown, T. A., Aug 2013, In : Genetic Resources and Crop Evolution. 60, 6, p. 1831–1842 12 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2012

Genotyping SSR length variants by isothermal DNA amplification

Lee, D., Ialicicco, M., Akkinepalli, H., Morreale, G., Liu, Y., Leung, H., Scippa, G. S., Greenland, A. & Mackay, I., 17 Oct 2012, In : Genome. 55, 09, p. 691-695 5 p.

Research output: Contribution to journalArticle

Morphological and molecular diversity of Tunisian chickpea

Khamassi, K., Bettaieb Ben Kaab, L., Khoufi, S., Chaabane, R., da Silva, J. A., Mackay, I. J. & Ben Naceur, M., 2012, In : European Journal of Horticultural Science. 77, 1, p. 31-40 10 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Snapshots of gene expression in rice: limitations for allelic expression imbalance determination

Akkinepalli, H., Ereful, N., Liu, Y., Malabanan, K., Howells, R., Stamati, K., Powell, W., Leung, H., Greenland, A., Mackay, I. & Lee, D., May 2012, In : Mammalian Genome. 55, 5, p. 400-6 7 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2011

Application of QUIZ for GM quantification in food

La Mura, M., Allnutt, T. R., Greenland, A., Mackay, I. & Lee, D., 15 Apr 2011, In : Food Chemistry. 125, 4, p. 1340-1344 5 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Reanalyses of the historical series of UK variety trials to quantify the contributions of genetic and environmental factors to trends and variability in yield over time

Mackay, I., Horwell, A., Garner, J., White, J., McKee, J. & Philpott, H., 2011, In : Theoretical and Applied Genetics. 122, 1, p. 225-238 14 p.

Research output: Contribution to journalArticle

78 Citations (Scopus)
2010

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome

Cockram, J., White, J., Zuluaga, DL., Smith, D., Comadran, J., Macaulay, M., Lou, Z., Kearsey, MJ., Werner, P., Harrap, D., Tapsell, C., H, L., Hedley, PE., Stein, N., Schulte, DE., Steuernagel, B., Marshall, D., Thomas, WBT., L, R., Mackay, I. & 1 others, Balding, D., 14 Dec 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 50, p. 21611-21616 6 p.

Research output: Contribution to journalArticle

182 Citations (Scopus)

Quantitation using informative zeros (QUIZ): Application for GMO detection and quantification without recourse to certified reference material

Lee, D., Mura, M. L., Greenland, A. & Mackay, I., 15 Feb 2010, In : Food Chemistry. 118, 4, p. 974-978 5 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Whole-genome association mapping in elite inbred crop varietiesThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

Francki, M., Waugh, R., Marshall, D., Thomas, B., Comadran, J., Russell, J., Close, T., Stein, N., Hayes, P., Muehlbauer, G., Cockram, J., O’Sullivan, D., Mackay, I., Flavell, A. & Ramsay, L., Nov 2010, In : Genome. 53, 11, p. 967-972

Research output: Contribution to journalArticle

18 Citations (Scopus)
2009

A quantitative genomic imbalance gene expression assay in a hexaploid species: Wheat (Triticum aestivum)

Stamati, K., Mackay, I. & Powell, W., 2009, In : Genome Biology. 52, 1, p. 89-94 6 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Asymmetric allele-specific expression in relation to developmental variation and drought stress in barley hybrids

von Korff, M., Radovic, S., Choumane, W., Stamati, K., Udupa, S. M., Grando, S., Ceccarelli, S., Mackay, I., Powell, W., Baum, M. & Morgante, M., Jul 2009, In : Plant Soil. 59, 1, p. 14-26 13 p.

Research output: Contribution to journalArticle

Open Access
34 Citations (Scopus)
2008

Association mapping of partitioning loci in barley

Cockram, J., White, J., Leigh, F. J., Lea, V. J., Chiapparino, E., Laurie, D. A., Mackay, I. J., Powell, W. & O'Sullivan, D. M., 18 Feb 2008, In : BMC Genetics. 9, 16.

Research output: Contribution to journalArticle

Open Access
71 Citations (Scopus)

Population-based resequencing reveals that the flowering time adaptation of cultivated barley originated east of the Fertile Crescent

Jones, H., Leigh, F. J., Mackay, I., Bower, M. A., Smith, L. M. J., Charles, M. P., Jones, G., Jones, M. K., Brown, T. A. & Powell, W., Oct 2008, In : Molecular Biology and Evolution. 25, 10, p. 2211-9 9 p.

Research output: Contribution to journalArticle

Open Access
138 Citations (Scopus)

The genetic diversity of UK, US and Australian cultivars of Triticum aestivum measured by DArT markers and considered by genome

White, J., Law, J. R., MacKay, I., Chalmers, K. J., Smith, J. S. C., Kilian, A. & Powell, W., 2008, In : Theoretical and Applied Genetics. 116, 3, p. 439-453 15 p.

Research output: Contribution to journalArticle

79 Citations (Scopus)
2007

LPIN2 is associated with type 2 diabetes, glucose metabolism, and body composition

Aulchenko, Y. S., Pullen, J., Kloosterman, W. P., Yazdanpanah, M., Hofman, A., Vaessen, N., Snijders, P. J. L. M., Zubakov, D., Mackay, I., Olavesen, M., Sidhu, B., Smith, V. E., Carey, A., Berezikov, E., Uitterlinden, A. G., Plasterk, R. H. A., Oostra, B. A. & Van Duijn, C. M., Dec 2007, In : Diabetes. 56, 12, p. 3020-3026 7 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)

Significant evidence of one or more susceptibility loci for endometriosis with near-Mendelian inheritance on chromosome 7p13-15

Zondervan, K. T., Treloar, S. A., Lin, J., Weeks, D. E., Nyholt, D. R., Mangion, J., MacKay, I. J., Cardon, L. R., Martin, N. G., Kennedy, S. H., Montgomery, G. W., Wicks, J., Wainwright, B. J., Henders, A., Zabaneh, D., Dawson, G., Smith, V., Carey, A., Bennett, S. T., O'Connor, D. T. & 3 others, Barlow, D., Lambert, A. & Ewen-White, K. R., Mar 2007, In : Human Reproduction. 22, 3, p. 717-728 12 p.

Research output: Contribution to journalArticle

39 Citations (Scopus)

The role of double-stranded break repair in the creation of phenotypic diversity at cereal VRN1 loci

Cockram, J., Mackay, I. J. & O'Sullivan, D. M., Dec 2007, In : Genetics. 177, 4, p. 2535-2539 5 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)
2006

A genome-wide screen in 1119 relative pairs with autoimmune thyroid disease

Taylor, J. C., Gough, S. C., Hunt, P. J., Brix, T. H., Chatterjee, K., Connell, J. M., Franklyn, J. A., Hegedus, L., Robinson, B. G., Wiersinga, W. M., Wass, J. A. H., Zabaneh, D., Mackay, I. & Weetman, A. P., Feb 2006, In : Journal of Clinical Endocrinology and Metabolism. 91, 2, p. 646-653 8 p.

Research output: Contribution to journalArticle

68 Citations (Scopus)

Cross-calibration of dual-energy X-ray densitometers for a large, multi-center genetic study of osteoporosis

Reid, D. M., Mackay, I., Wilkinson, S., Miller, C., Schuette, D. G., Compston, J., Cooper, C., Duncan, E., Galwey, N., Keen, R., Langdahl, B., McLellan, A., Pols, H., Uitterlinden, A., O'Riordan, J., Wass, J. A. H., Ralston, S. H. & Bennett, S. T., Jan 2006, In : Osteoporosis International. 17, 1, p. 125-132 8 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)
2005

Association of the TSHR gene with Graves' disease: the first disease specific locus

Dechairo, B. M., Zabaneh, D., Collins, J., Brand, O., Dawson, G. J., Green, A. P., Mackay, I., Franklyn, J. A., Connell, J. M., Wass, J. A. H., Wiersinga, W. M., Hegedus, L., Brix, T., Robinson, B. G., Hunt, P. J., Weetman, A. P., Carey, A. H. & Gough, S. C., Nov 2005, In : European Journal of Human Genetics. 13, 11, p. 1223-1230 8 p.

Research output: Contribution to journalArticle

125 Citations (Scopus)

Genomewide Linkage Study in 1,176 Affected Sister Pair Families Identifies a Significant Susceptibility Locus for Endometriosis on Chromosome 10q26

Treloar, S. A., Wicks, J., Nyholt, D. R., Montgomery, G. W., Bahlo, M., Smith, V., Dawson, G., Mackay, I. J., Weeks, D. E., Bennett, S. T., Carey, A., Ewen-White, K. R., Duffy, D. L., O’Connor, D. T., Barlow, D. H., Martin, N. G. & Kennedy, S. H., 4 Aug 2005, In : American Journal of Human Genetics. 77, 3, p. 365-376 12 p.

Research output: Contribution to journalArticle

144 Citations (Scopus)