Projects per year
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Collaborations and top research areas from the last five years
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HoloRuminant: Understanding microbiomes of the ruminant holobiont.
Dewhurst, R. (PI), Ferguson, H. (CoI), Roehe, R. (CoI), Newbold, J. (CoI), Lima, J. (Researcher) & Cook, R. (PhD Student)
1/04/21 → 31/03/26
Project: Research
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CCI Photonics Bacteriology on Dairy Milkfilms
Lima, J. (PI), Seaton, A. (Consultant) & Christian, M. (Other)
1/11/24 → 31/05/25
Project: Research
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The fungal milk microbiome of dairy cattle and its implications on mastitis
Ferguson, H. (PI), Lima, J. (CoPI), Pollock, J. (Researcher) & Cook, R. (PhD Student)
15/02/23 → 15/08/24
Project: Research
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Predicting beef diet nutritional composition and intake from rumen metagenomic profiles
Saez-Torillo, S. N., Danielsson, R., Nguyen, T., Patricia Do Jardim Goncalves Lima, J., Cleveland, M. A., Roehe, R. & Martínez-Álvaro, M., 6 Jan 2026, (First published) In: Animal Nutrition. 48 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Rumen microbiome profiles of dairy cattle are affected by the presence of, and vaccination against, the abomasal parasitic nematode Ostertagia ostertagi
Patricia Do Jardim Goncalves Lima, J., McNeilly, T. N., Auffret, M. D., Steele, P., Frew, D., Martínez-Álvaro, M., Dewhurst, R., Watson, M. & Roehe, R., 8 Dec 2025, In: Scientific Reports. 16, 1, p. 1067 19 p., 1067.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Downloads (Pure) -
The use of ruminal metabolic information to select microbial genes for microbiome-driven breeding to mitigate methane emissions from beef cattle
Roehe, R., Nguyen, T., Lima, J. & Martinez Alvaro, M., 11 Jul 2025, (First published) Animal - Science proceedings. 1 ed. Elsevier, Vol. 16. p. 66-67 049Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
File48 Downloads (Pure) -
Use of animal-mounted accelerometers to identify positive welfare in dairy cattle
Ferguson, H., Davison, C., Patricia Do Jardim Goncalves Lima, J., Haskell, M., Dewhurst, R., Michie, C. W., Andonovic, I., Tachtatzis, C., Swan, A., Brooking, M., Truelove, L. & Shewbridge Carter, L., 17 Oct 2025, (First published) In: Dairy Science and Management. 2, 15.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Downloads (Pure) -
Including microbiome information in a multi-trait genomic evaluation: a case study on longitudinal growth performance in beef cattle
Martínez-Álvaro, M., Mattock, J., González-Recio, Ó., Saborío-Montero, A., Weng, Z., Lima, J., Duthie, C.-A., Dewhurst, R., Cleveland, M. A., Watson, M. & Roehe, R., 15 Mar 2024, (First published) In: Genetics Selection Evolution. 56, 1, 16 p., 19.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)26 Downloads (Pure)
Datasets
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Comparative analysis of the anthelmintic efficacy of European heather extracts on Teladorsagia circumcincta and Trichostrongylus colubriformis egg hatching and larval motility
Shepherd, F. (Creator), Chylinski, C. (Creator), Hutchings, M. R. (Creator), Lima, J. (Creator), Davidson, R. (Creator), Kelly, R. (Creator), Macrae, A. (Creator), Salminen, J.-P. (Creator), Engström, M. T. (Creator), Maurer, V. (Creator), Steinshamn, H. (Creator), Fittje, S. (Creator), Perez, A. M. (Creator), García, R. R. (Creator) & Athanasiadou, S. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.c.6283832, https://springernature.figshare.com/collections/Comparative_analysis_of_the_anthelmintic_efficacy_of_European_heather_extracts_on_Teladorsagia_circumcincta_and_Trichostrongylus_colubriformis_egg_hatching_and_larval_motility/6283832
Dataset