Photo of Marc Auffret

Marc Auffret

Dr

  • Easter Bush, Roslin Institute Building

    EH25 9RG Midlothian

    United Kingdom

20092022
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Research Output 2009 2019

Filter
Article
2019
6 Downloads (Pure)
Open Access
File
Metagenome
Protein Databases
Microbiota
Rumen
Enzymes
18 Downloads (Pure)

Identification of rumen microbial genes involved in pathways linked to appetite, growth and feed conversion efficiency in cattle

Lima, J., Auffret, M., Stewart, R. D., Dewhurst, RJ., Duthie, C-A., Snelling, T. J., Walker, A. W., Freeman, T. C., Watson, M. & Roehe, R., 8 Aug 2019, In : Frontiers in Genetics. 10, 701.

Research output: Contribution to journalArticle

Open Access
File
Microbial Genes
Rumen
Appetite
Microbiota
Growth
2018
59 Citations (Scopus)
4 Downloads (Pure)

Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen

Stewart, RD., Auffret, MD., Warr, A., Wiser, AH., Press, MO., Langford, KW., Liachko, I., Snelling, TJ., Dewhurst, RJ., Walker, AW., Roehe, R. & Watson, M., 28 Feb 2018, In : Nature Communications. 9, 870.

Research output: Contribution to journalArticle

Open Access
File
rumen
cows
genome
carbohydrate metabolism
cattle
1 Citation (Scopus)
3 Downloads (Pure)

Fat accretion measurements strengthen the relationship between feed conversion efficiency and nitrogen isotopic discrimination while rumen microbial genes contribute little

Meale, SJ., Auffret, MD., Watson, M., Morgavi, DP., Cantalapiedra-Hijar, G., Duthie, C-A., Roehe, R. & Dewhurst, RJ., 1 Mar 2018, In : Scientific Reports. 8, 1, 7 p., 3854.

Research output: Contribution to journalArticle

Open Access
File
Microbial Genes
Rumen
Nitrogen
Fats
Nitrates
10 Citations (Scopus)

Identification, comparison and validation of robust rumen microbial biomarkers for methane emissions using diverse Bos taurus breeds and basal diets

Auffret, MD., Stewart, R., Dewhurst, RJ., Duthie, C-A., Rooke, JA., Wallace, RJ., Freeman, TC., Snelling, TJ., Watson, M. & Roehe, R., 9 Jan 2018, In : Frontiers in Microbiology. 8, 15 p., 2642.

Research output: Contribution to journalArticle

Open Access
File
Rumen
Methane
Biomarkers
Diet
Metagenomics
2 Citations (Scopus)
9 Downloads (Pure)

MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)

Stewart, R. D., Auffret, M., Snelling, T. J., Roehe, R. & Watson, M., 10 Nov 2018, In : Bioinformatics. 3 p., bty905.

Research output: Contribution to journalArticle

Open Access
File
Metagenome
Genome
Computational Biology
Metagenomics
Databases
2017
18 Citations (Scopus)
1 Downloads (Pure)

The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle

Auffret, MD., Dewhurst, RJ., Duthie, C-A., Rooke, JA., Wallace, RJ., Freeman, TC., Stewart, R., Watson, M. & Roehe, R., 11 Dec 2017, In : Microbiome. 5, 159

Research output: Contribution to journalArticle

Open Access
File
beef cattle
antibiotic resistance
rumen
pathogenicity
diet
2016
8 Citations (Scopus)
1 Downloads (Pure)

The role of microbial community composition in controlling soil respiration responses to temperature

Auffret, M. D., Karhu, K., Khachane, A., Dungait, J. A. J., Fraser, F., Hopkins, D. W., Wookey, P. A., Singh, B. K., Freitag, T. E., Hartley, I. P. & Prosser, J. I., 2016, In : PLoS ONE. 11, 10, e0165448.

Research output: Contribution to journalArticle

Open Access
File
soil respiration
microbial communities
Respiration
Soil
Soils
2015
22 Citations (Scopus)

Importance of Rhodococcus strains in a bacterial consortium degrading a mixture of hydrocarbons, gasoline, and diesel oil additives revealed by metatranscriptomic analysis

Auffret, M. D., Yergeau, E., Labbé, D., Fayolle-Guichard, F. & Greer, C. W., Mar 2015, In : Applied Microbiology and Biotechnology. 99, 5, p. 2419-30 12 p.

Research output: Contribution to journalArticle

Rhodococcus
Gasoline
Hydrocarbons
Oils
Actinobacteria
2013
29 Citations (Scopus)

Impact of water quality on the bacterial populations and off-flavours in recirculating aquaculture systems

Auffret, M., Yergeau, É., Pilote, A., Proulx, É., Proulx, D., Greer, C. W., Vandenberg, G. & Villemur, R., May 2013, In : FEMS Microbiology Ecology. 84, 2, p. 235-47 13 p.

Research output: Contribution to journalArticle

Aquaculture
Water Quality
Population
Fishes
Myxococcales
2011
27 Citations (Scopus)

Establishment of a real-time PCR method for quantification of geosmin-producing Streptomyces spp. in recirculating aquaculture systems

Auffret, M., Pilote, A., Proulx, E., Proulx, D., Vandenberg, G. & Villemur, R., 15 Dec 2011, In : Water Research. 45, 20, p. 6753-62 10 p.

Research output: Contribution to journalArticle

Aquaculture
Streptomyces
Real-Time Polymerase Chain Reaction
Fish Products
Genes
2009
56 Citations (Scopus)

Degradation of a mixture of hydrocarbons, gasoline, and diesel oil additives by Rhodococcus aetherivorans and Rhodococcus wratislaviensis

Auffret, M., Labbé, D., Thouand, G., Greer, C. W. & Fayolle-Guichard, F., Dec 2009, In : Applied and Environmental Microbiology. 75, 24, p. 7774-82 9 p.

Research output: Contribution to journalArticle

Rhodococcus
Gasoline
Hydrocarbons
Oils
Toluene