Research output per year
Research output per year
- 46 results
Search results
-
2024
Isolation and characterisation of Shigatoxigenic Escherichia coli (STEC) serotype O157:H7 from Scottish sheep
Nale, J., Henry, M., Innocent, G., Webster, C., Evans, J., Proctor, S., Allison, L., Holmes, A., Holden, N. & Tongue, S., 8 Apr 2024.Research output: Contribution to conference › Poster › peer-review
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Mobility and growth in confined spaces are important mechanisms for the establishment of Bacillus subtilis in the rhizosphere
Engelhardt, I. C., Holden, N., Daniell, T. J. & Dupuy, L. X., 6 Aug 2024, (First published) In: Microbiology. 170, 8, 001477.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Downloads (Pure) -
2023
Harnessing diverse prophages of STEC O157:H7 phage-type 8 for rapid identification of fresh produce-associated STEC strains
Nale, J., Tongue, S. & Holden, N., 15 Jun 2023.Research output: Contribution to conference › Paper
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The UK Crop Microbiome Cryobank: a utility and model for supporting Phytobiomes research
Ryan, M. J., Mauchline, T. H., Malone, J. G., Jones, S., Thompson, C. M. A., Bonnin, J. M., Stewart, H., Yau, P. T. O., Taketani, R. G., Clark, I. M. & Holden, N., Dec 2023, In: CABI Agriculture and Bioscience. 4, 1, 53.Research output: Contribution to journal › Short communication › peer-review
Open AccessFile21 Downloads (Pure) -
Vacuolar localisation of anthocyanin pigmentation in microgreen cotyledons of basil, cabbage and mustard greens does not impact on colonisation by Shiga-toxigenic Escherichia coli O157:H7
Wright, K., Marshall, J., Wright, P. & Holden, N., Dec 2023, In: Food Microbiology. 116, 104367.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)87 Downloads (Pure) -
2022
Harnessing agricultural microbiomes for human pathogen control
Brennan, F. P., Alsanius, B. W., Allende, A., Burgess, C. M., Moreira, H., Johannessen, G. S., Castro, P. M. L., Uyttendaele, M., Truchado, P. & Holden, N. J., 19 May 2022, (First published) In: ISME Communications. 2, 1, 44.Research output: Contribution to journal › Short communication › peer-review
Open AccessFile57 Downloads (Pure) -
Microbial cancer therapeutics: A promising approach
Diwan, D., Cheng, L., Usmani, Z., Sharma, M., Holden, N., Willoughby, N., Sangwan, N., Baadhe, R. R., Liu, C. & Gupta, V. K., Nov 2022, In: Seminars in Cancer Biology. 86, Pt 3, p. 931-950 20 p.Research output: Contribution to journal › Review article › peer-review
Open AccessFile11 Citations (Scopus)116 Downloads (Pure) -
Novel form of collective movement by soil bacteria
Engelhardt, I. C., Patko, D., Liu, Y., Mimault, M., de las Heras Martinez, G., George, T. S., MacDonald, M., Ptashnyk, M., Sukhodub, T., Stanley-Wall, N. R., Holden, N., Daniell, T. J. & Dupuy, L. X., Oct 2022, In: ISME Journal. 16, 10, p. 2337-2347 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile14 Citations (Scopus)45 Downloads (Pure) -
Phylogeny and potential virulence of cryptic clade Escherichia coli species complex isolates derived from an arable field trial
MacKenzie, K., Marshall, J., Wright, F., Gunn, G. & Holden, N., Jan 2022, In: Current Research in Microbial Sciences. 3, 100093.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)111 Downloads (Pure) -
Plant species‐dependent transmission of Escherichia coli O157: H7 from the spermosphere to cotyledons and first leaves
Wright, K. M., Wright, P. J. & Holden, N. J., Dec 2022, In: Environmental Microbiology Reports. 14, 6, p. 926-933 8 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)42 Downloads (Pure) -
2021
Cryopreservation of a soil microbiome using a Stirling 1 cycle approach - a genomic assessment
Cafa, G., Bonnin, J. M., Holden, N., Malone, J. G., Mauchline, T. H., Clark, I., Taketani, R. & Ryan, M. J., 16 Jul 2021, (agriRxiv).Research output: Working paper/Preprint › Preprint
Open AccessFile32 Downloads (Pure) -
Functional Analysis of Shiga Toxin-Producing Escherichia coli Biofilm Components in Plant Leaves
Holden, N. J., Wright, K. M., Marshall, J. & Holmes, A., 12 Mar 2021, (First published) Shiga Toxin-Producing E. coli. Schueller, S. & Bielaszewska, M. (eds.). New York: Springer Science & Business Media, Vol. 2291. p. 163-175 13 p. (Methods in Molecular Biology; vol. 2291).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Citation (Scopus) -
Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655.
Holden, N., Dec 2021, In: Data in Brief. 39, 107586.Research output: Contribution to journal › Data article › peer-review
Open AccessFile49 Downloads (Pure) -
How Can Plant Pathology Help in the Control of Human Pathogens Associated with Edible Crop Plants?
Holden, N., 21 May 2021, (First published) Plant Diseases and Food Security in the 21st Century. Scott, P., Strange, R., Korsten, L. & Gullino, M. L. (eds.). Springer, Cham: Springer, p. 259-275Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open AccessFile24 Downloads (Pure) -
MacConkey broth purple provides an efficient MPN estimation method for Shigatoxigenic Escherichia coli
Wright, K., Wright, P. & Holden, N., Feb 2021, In: Journal of Microbiological Methods. 181, 106132.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)20 Downloads (Pure) -
Plant–environment microscopy tracks interactions of Bacillus subtilis with plant roots across the entire rhizosphere
Liu, Y., Patko, D., Engelhardt, I., George, T. S., Stanley-Wall, N. R., Ladmiral, V., Ameduri, B., Daniell, T. J., Holden, N., MacDonald, M. P. & Dupuy, L. X., 30 Nov 2021, Proceedings of the National Academy of Sciences of the United States of America. 48 ed. Vol. 118. e2109176118. (Proceedings of the National Academy of Sciences of the United States of America).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Open Access23 Citations (Scopus) -
The rise, fall and resurrection of chemical induced resistance agents
Yassin, M., Ton, J., Rolfe, S., Valentine, T., Cromley, M., Holden, N. & Newton, A., Sept 2021, In: Pest Management Science. 77, 9, p. 3900-3909 10 p.Research output: Contribution to journal › Review article › peer-review
Open AccessFile33 Citations (Scopus)84 Downloads (Pure) -
The role of L-arabinose metabolism for Escherichia coli O157:H7 in edible plants
Crozier, L., Marshall, J., Holmes, A., Wright, K. M., Rossez, Y., Merget, B., Humphris, S., Toth, I., Jackson, R. W. & Holden, N. J., 28 Jul 2021, In: Microbiology. 167, 7, 001070.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Citations (Scopus)44 Downloads (Pure) -
2020
A high-throughput genomic screen identifies a role for the plasmid-borne type II secretion system of Escherichia coli O157:H7 (Sakai) in plant-microbe interactions
Holmes, A., Pritchard, L., Hedley, P. E., Morris, J., McAteer, S. P., Gally, D. L. & Holden, N., Nov 2020, In: Genomics. 112, 6, p. 4242-4253 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)42 Downloads (Pure) -
Antimicrobial resistance: bringing Scottish expertise together to find the solutions
Holden, N., Humphry, R., Avery, L., Gunn, G., Foster, G., Innocent, G., Scott, K., Freitag, T., Pagaling, E., Watson, E. & Silva, N., 30 Oct 2020Research output: Other contribution
Open Access -
Chitosan primes plant defence mechanisms against Botrytis cinerea, including expression of Avr9/Cf‐9 rapidly elicited genes
de Vega, D., Holden, N., Hedley, P., Morris, J., Luna, E. & Newton, A., 23 Oct 2020, (First published) In: Plant, Cell and Environment. 44, 1, p. 290-303 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile32 Citations (Scopus)58 Downloads (Pure) -
Dataset of Escherichia coli O157: H7 genes enriched in adherence to spinach root tissue
Holmes, A., Pritchard, L., Hedley, P., Morris, J., McAteer, S. P., Gally, D. L. & Holden, N. J., Aug 2020, In: Data in Brief. 31, 105769.Research output: Contribution to journal › Article › peer-review
Open Access -
Editorial: Plants as Alternative Hosts for Human and Animal Pathogens – Second Edition
Schikora, A., Wilson Jackson, R., Holden, N. & Van Oberbeek, L., 14 Jul 2020, In: Frontiers in Microbiology. 11, 1439.Research output: Contribution to journal › Editorial
Open AccessFile118 Downloads (Pure) -
Escherichia coli O157:H7 F9 Fimbriae Recognize Plant Xyloglucan and Elicit a Response in Arabidopsis thaliana
Holmes, A., Rossez, Y., Wright, K., Hedley, P., Morris, J., Willats, W. & Holden, N., 19 Dec 2020, (First published) In: International Journal of Molecular Sciences. 21, 24, 19 p., 9720.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)45 Downloads (Pure) -
Framework for quantification of the dynamics of root colonization by Pseudomonas fluorescens isolate SBW25
Carroll, D., Holden, N., Gifford, M. & Dupuy, L., 25 Sept 2020, (First published) In: Frontiers in Microbiology. 11, 585443.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Citations (Scopus)66 Downloads (Pure) -
Thematic issue on Human Pathogens in the Environment: biology and risk factors
Holden, N., Kredics, L. & Barak, J., 7 May 2020, (First published) In: FEMS Microbiology Letters. 367, 8, fnaa068.Research output: Contribution to journal › Editorial
Open Access -
Variability in growth responses of non-O157 EHEC isolates in leafy vegetables, sprouted seeds and soil extracts occurs at the isolate level
Merget, B., Dobrindt, U., Forbes, K. J., Strachan, N. J. C., Brennan, F. & Holden, N. J., 18 Feb 2020, (First published) In: FEMS Microbiology Letters. 367, 1, fnaa030.Research output: Contribution to journal › Article › peer-review
5 Citations (Scopus) -
2019
Bacterial Adherence to Plant and Animal Surfaces Via Adhesin-Lipid Interactions
Rossi, C., Cazzola, H., Holden, N. & Rossez, Y., 27 Sept 2019, Health Consequences of Microbial Interactions with Hydrocarbons, Oils, and Lipids. Goldfine, H. (ed.). Switzerland: Springer, p. 1-21 (Handbook of Hydrocarbon and Lipid Microbiology ).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms
Grabowiecka, E., Martin, D., Crozier, L. & Holden, N., Feb 2019, In: Data in Brief. 22, p. 126-131 6 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Influence of plant species, tissue type, and temperature on the capacity of Shigatoxigenic Escherichia coli to colonize, grow, and be internalized by plants
Merget, B., Forbes, K. J., Brennan, F., McAteer, S., Shepherd, T., Strachan, N. J. C. & Holden, N. J., May 2019, In: Applied and Environmental Microbiology. 85, 11, e00123-19.Research output: Contribution to journal › Article › peer-review
18 Citations (Scopus) -
You Are What You Can Find to Eat: Bacterial Metabolism in the Rhizosphere
Holden, N., 2019, In: Current Issues in Molecular Biology. 30, p. 1-16 16 p.Research output: Contribution to journal › Review article › peer-review
3 Citations (Scopus) -
2018
Quantification and colonisation dynamics of Escherichia coli O157:H7 inoculation of microgreens species and plant growth substrates
Wright, K. M. & Holden, N. J., 20 May 2018, In: International Journal of Food Microbiology. 273, p. 1-10 10 p.Research output: Contribution to journal › Article › peer-review
43 Citations (Scopus) -
2017
Differences in internalization and growth of Escherichia coli O157:H7 within the apoplast of edible plants, spinach and lettuce, compared with the model species Nicotiana benthamiana
Wright, K. M., Crozier, L., Marshall, J., Merget, B., Holmes, A. & Holden, N. J., May 2017, In: Microbial Biotechnology. 10, 3, p. 555-569 15 p.Research output: Contribution to journal › Article › peer-review
Open Access45 Citations (Scopus) -
Patchy promiscuity: Machine learning applied to predict the host specificity of Salmonella enterica and Escherichia coli
Lupolova, N., Dallman, T. J., Holden, N. J. & Gally, D. L., Oct 2017, In: Microbial Genomics. 3, 10, 000135.Research output: Contribution to journal › Article › peer-review
Open Access34 Citations (Scopus) -
2016
Alternate thermoregulation and functional binding of Escherichia coli type 1 fimbriae in environmental and animal isolates
Marshall, J., Rossez, Y., Mainda, G., Gally, D. L., Daniell, T. J. & Holden, N. J., Nov 2016, In: FEMS Microbiology Letters. 363, 22, fnw251.Research output: Contribution to journal › Letter › peer-review
Open Access9 Citations (Scopus) -
Microarray-based screening of differentially expressed genes of E. coli o157:H7 sakai during preharvest survival on butterhead lettuce
Van der Linden, I., Cottyn, B., Uyttendaele, M., Vlaemynck, G., Heyndrickx, M., Maes, M. & Holden, N., 1 Mar 2016, In: Agriculture (Switzerland). 6, 1, 6.Research output: Contribution to journal › Article › peer-review
Open Access11 Citations (Scopus) -
Whole-transcriptome analysis of verocytotoxigenic escherichia coli O157: H7 (Sakai) suggests plant-species-specific metabolic responses on exposure to spinach and lettuce extracts
Crozier, L., Hedley, P. E., Morris, J., Wagstaff, C., Andrews, S. C., Toth, I., Jackson, R. W. & Holden, N. J., 12 Jul 2016, (First published) In: Frontiers in Microbiology. 7, JUL, 1088.Research output: Contribution to journal › Article › peer-review
Open Access15 Citations (Scopus) -
2015
Bacterial Flagella: Twist and Stick, or Dodge across the Kingdoms
Rossez, Y., Wolfson, E. B., Holmes, A., Gally, D. L. & Holden, N. J., 15 Jan 2015, In: PLoS Pathogens. 11, 1, p. 1-15 15 p., e1004483.Research output: Contribution to journal › Review article › peer-review
Open Access128 Citations (Scopus) -
Editorial on plants as alternative hosts for human and animal pathogens
Holden, N. J., Jackson, R. W. & Schikora, A., 30 Apr 2015, In: Frontiers in Microbiology. 6, APR, 397.Research output: Contribution to journal › Editorial
Open Access16 Citations (Scopus) -
2014
An optimized method for the extraction of bacterial mRNA from plant roots infected with Escherichia coli O157: H7
Holmes, A., Birse, L., Jackson, R. W. & Holden, N. J., 10 Jun 2014, In: Frontiers in Microbiology. 5, JUN, 286.Research output: Contribution to journal › Article › peer-review
Open Access14 Citations (Scopus) -
Escherichia coli common pilus (ECP) targets arabinosyl residues in plant cell walls to mediate adhesion to fresh produce plants
Rossez, Y., Holmes, A., Lodberg-Pedersen, H., Birse, L., Marshall, J., Willats, W. G. T., Toth, I. K. & Holden, N. J., 5 Dec 2014, In: Journal of Biological Chemistry. 289, 49, p. 34349-34365 17 p.Research output: Contribution to journal › Article › peer-review
Open Access28 Citations (Scopus) -
Flagella interact with ionic plant lipids to mediate adherence of pathogenic Escherichia coli to fresh produce plants
Rossez, Y., Holmes, A., Wolfson, E. B., Gally, D. L., Mahajan, A., Pedersen, H. L., Willats, W. G. T., Toth, I. K. & Holden, N. J., Jul 2014, In: Environmental Microbiology. 16, 7, p. 2181-2195 15 p.Research output: Contribution to journal › Article › peer-review
34 Citations (Scopus) -
Prevalence and diversity of Escherichia coli isolated from a barley trial supplemented with bulky organic soil amendments: Green compost and bovine slurry
Holden, N. J., Wright, F., Mackenzie, K., Marshall, J., Mitchell, S., Mahajan, A., Wheatley, R. & Daniell, T. J., Mar 2014, In: Letters in Applied Microbiology. 58, 3, p. 205-212 8 p.Research output: Contribution to journal › Article › peer-review
8 Citations (Scopus) -
2013
Mechanisms of Plant Colonization by Human Pathogenic Bacteria: An Emphasis on the Roots and Rhizosphere
Holden, N. J., Pritchard, L., Wright, K. & Toth, I. K., 18 Mar 2013, Molecular Microbial Ecology of the Rhizosphere. John Wiley and Sons Inc., Vol. 2. p. 1217-1226 10 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
2 Citations (Scopus) -
The Endophytic Lifestyle of Escherichia coli O157:H7: Quantification and Internal Localization in Roots
Wright, K. M., Chapman, S., McGeachy, K., Humphris, S., Campbell, E., Toth, I. K. & Holden, N. J., Apr 2013, In: Phytopathology. 103, 4, p. 333-340Research output: Contribution to journal › Article › peer-review
Open Access60 Citations (Scopus) -
2012
Alignment-Free Design of Highly Discriminatory Diagnostic Primer Sets for Escherichia coli O104:H4 Outbreak Strains
Bielaszewska, M., Holden, N. J., Karch, H., Pritchard, L. & Toth, I. K., 5 Apr 2012, In: PLoS ONE. 7, 4, e34498.Research output: Contribution to journal › Article › peer-review
Open Access36 Citations (Scopus)