- 23 results
Search results
-
2025
The potential selection response of microbiome-driven breeding to mitigate methane emissions from beef cattle considering correlated production traits
Nguyen, T., Martinez Alvaro, M., Cleveland, M. A. & Roehe, R., 14 Apr 2025, Animal - Science Proceedings. Elsevier, Vol. 16. 047Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Open AccessFile128 Downloads (Pure) -
The use of ruminal metabolic information to select microbial genes for microbiome-driven breeding to mitigate methane emissions from beef cattle
Roehe, R., Nguyen, T., Lima, J. & Martinez Alvaro, M., 11 Jul 2025, (First published) Animal - Science proceedings. 1 ed. Elsevier, Vol. 16. p. 66-67 049Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
File57 Downloads (Pure) -
2023
Identification of intestinal and fecal microbial biomarkers using a porcine social stress model
Nguyen, T., Martinez Alvaro, M., Patricia Do Jardim Goncalves Lima, J., Auffret, M., Rutherford, K., Simm, G., Dewhurst, R., Baima, E. T. & Roehe, R., 9 Nov 2023, (First published) In: Frontiers in Microbiology. 14, 1197371.Research output: Contribution to journal › Article › peer-review
Open AccessFile26 Link opens in a new tab Citations (Scopus)66 Downloads (Pure) -
Invited review: Novel methods and perspectives for modulating the rumen microbiome through selective breeding as a means to improve complex traits: Implications for methane emissions in cattle
González-Recio, O., Martínez-Álvaro, M., Tiezzi, F., Saborío-Montero, A., Maltecca, C. & Roehe, R., Mar 2023, In: Livestock Science. 269, 105171.Research output: Contribution to journal › Review article › peer-review
Open AccessFile16 Link opens in a new tab Citations (Scopus)77 Downloads (Pure) -
KOunt: a reproducible KEGG orthologue abundance workflow
Mattock, J., Martínez-Álvaro, M., Cleveland, M. A., Roehe, R. & Watson, M., 3 Aug 2023, (First published) In: Bioinformatics (Oxford, England). 39, 8, btad483.Research output: Contribution to journal › Data article › peer-review
Open AccessFile3 Link opens in a new tab Citations (Scopus)47 Downloads (Pure) -
2022
Bovine host genome acts on rumen microbiome function linked to methane emissions
Martinez Alvaro, M., Auffret, M., Duthie, C.-A., Dewhurst, R., Cleveland, M. A., Watson, M. & Roehe, R., 12 Apr 2022, (First published) In: Communications Biology. 5, 350.Research output: Contribution to journal › Article › peer-review
Open AccessFile74 Link opens in a new tab Citations (Scopus)94 Downloads (Pure) -
Concepts and Consequences of a Core Gut Microbiota for Animal Growth and Development
Perlman, D., Martínez-Álvaro, M., Moraïs, S., Altshuler, I., Hagen, L. H., Jami, E., Roehe, R., Pope, P. B. & Mizrahi, I., Feb 2022, In: Annual Review of Animal Biosciences. 10, p. 177-201 25 p.Research output: Contribution to journal › Review article › peer-review
45 Link opens in a new tab Citations (Scopus) -
Microbiome‑driven breeding strategy potentially improves beef fatty acid profile benefiting human health and reduces methane emissions
Martinez Alvaro, M., Mattock, J., Auffret, M., Weng, Z., Duthie, C.-A., Dewhurst, R., Cleveland, M. A., Watson, M. & Roehe, R., 5 Oct 2022, (First published) In: Microbiome. 10, 1, 166.Research output: Contribution to journal › Article › peer-review
Open AccessFile28 Link opens in a new tab Citations (Scopus)151 Downloads (Pure) -
2021
A heat diffusion multilayer network approach for the identification of functional biomarkers in rumen methane emissions
Wang, M., Wang, H., Zheng, H., Dewhurst, R. & Roehe, R., Aug 2021, In: Methods. 192, p. 57-66 10 p., 2020.09.014 .Research output: Contribution to journal › Article › peer-review
Open AccessFile8 Link opens in a new tab Citations (Scopus)19 Downloads (Pure) -
Comparison of HPLC and NMR for quantification of the main volatile fatty acids in rumen digesta
Wang, M., Wang, H., Zheng, H., Uhrin, D., Dewhurst, R. J. & Roehe, R., 21 Dec 2021, (First published) In: Scientific Reports. 11, 1, 24337.Research output: Contribution to journal › Article › peer-review
Open AccessFile18 Link opens in a new tab Citations (Scopus)401 Downloads (Pure) -
Predicting enteric methane production from the rumen microbial composition of beef steers fed either a high concentrate or cut grass diet
Miller, G. A., Auffret, M., Roehe, R., Nisbet, H. & Martinez Alvaro, M., Apr 2021, Animal: Proceedings of the British Society of Animal Science. Vol. 12. p. 57 1 p. 78. (Animal - science proceedings).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
-
Taxonomic annotation of 16S rRNA sequences of pig intestinal samples using MG-RAST and QIIME2 generated different microbiota compositions
Lima, J., Manning, T., Rutherford, K. M., Baima, E. T., Dewhurst, R. J., Walsh, P. & Roehe, R., Jul 2021, In: Journal of Microbiological Methods. 186, 106235.Research output: Contribution to journal › Article › peer-review
Open AccessFile24 Link opens in a new tab Citations (Scopus)258 Downloads (Pure) -
Unravelling the Role of Rumen Microbial Communities, Genes, and Activities on Milk Fatty Acid Profile Using a Combination of Omics Approaches
Stergiadis, S., Cabeza-Luna, I., Mora-Ortiz, M., Stewart, R. D., Dewhurst, R. J., Humphries, D. J., Watson, M., Roehe, R. & Auffret, M. D., 21 Jan 2021, (First published) In: Frontiers in Microbiology. 11, 590441.Research output: Contribution to journal › Article › peer-review
Open AccessFile20 Link opens in a new tab Citations (Scopus)79 Downloads (Pure) -
2020
A knowledge-driven network-based analytical framework for the identification of rumen metabolites
Wang, M., Wang, H., Zheng, H., Dewhurst, R. J. & Roehe, R., Jul 2020, In: IEEE Transactions on Nanobioscience. 19, 3, p. 518-526 9 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile9 Link opens in a new tab Citations (Scopus)92 Downloads (Pure) -
A multilayer co-occurrence network reveals the systemic difference of diet-based rumen microbiome associated with methane yield phenotype
Wang, M., Wang, H., Zheng, H., Dewhurst, R. J. & Roehe, R., 16 Dec 2020, Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020. Park, T., Cho, Y.-R., Hu, X. T., Yoo, I., Woo, H. G., Wang, J., Facelli, J., Nam, S. & Kang, M. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2855-2860 6 p. 9313098. (Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
1 Link opens in a new tab Citation (Scopus) -
Identification of complex rumen microbiome interaction within diverse functional niches as mechanisms affecting the variation of methane emissions in bovine
Martinez Alvaro, M., Auffret, M., Stewart, R. D., Dewhurst, R., Duthie, C.-A., Rooke, J., Wallace, R. J., Shih, B., Freeman, T. C., Watson, M. & Roehe, R., 17 Apr 2020, (First published) In: Frontiers in Microbiology. 11, 659.Research output: Contribution to journal › Article › peer-review
Open AccessFile80 Link opens in a new tab Citations (Scopus)70 Downloads (Pure) -
Identification of microbial genetic capacities and potential mechanisms within the rumen microbiome explaining differences in beef cattle feed efficiency
Auffret, M., Stewart, R., Dewhurst, R., Duthie, C.-A., Watson, M. & Roehe, R., 5 Jun 2020, In: Frontiers in Microbiology. 11, p. 1-16 16 p., 1229.Research output: Contribution to journal › Article › peer-review
Open AccessFile53 Link opens in a new tab Citations (Scopus)105 Downloads (Pure) -
Links between the rumen microbiota, methane emissions and feed efficiency of finishing steers offered dietary lipid and nitrate supplementation: Diet effects on methylotrophic and hydrogenotrophic methanogens and links to feed efficiency
Bowen, J. M., Cormican, P., Lister, S. J., McCabe, M. S., Duthie, C.-A., Roehe, R. & Dewhurst, R., 24 Apr 2020, (First published) In: PLoS ONE. 15, 4, p. e0231759 e0231759.Research output: Contribution to journal › Article › peer-review
Open AccessFile28 Link opens in a new tab Citations (Scopus)83 Downloads (Pure) -
2019
A Phylogeny-aware Feature Ranking for Classification of Cattle Rumen Microbiome
Wassan, J. T., Zheng, H., Wang, H., Browne, F., Walsh, P., Manning, T., Dewhurst, R. & Roehe, R., Nov 2019, Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019. Yoo, I., Bi, J. & Hu, X. T. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1900-1906 7 p. 8983040. (Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
-
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery: Comprehensive resource of cow rumen genomes and a database of predicted proteins.
Stewart, R., Auffret, M., Warr, A., Walker, A., Roehe, R. & Watson, M., 2 Aug 2019, In: Nature Biotechnology. 37, p. 953-961 9 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile402 Link opens in a new tab Citations (Scopus)301 Downloads (Pure) -
MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)
Stewart, R. D., Auffret, M., Snelling, T. J., Roehe, R. & Watson, M., Jun 2019, In: Bioinformatics. 35, 12, 3 p., 2150-2152.Research output: Contribution to journal › Article › peer-review
Open AccessFile27 Link opens in a new tab Citations (Scopus)93 Downloads (Pure) -
Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements
Snelling, T. J., Auffret, M., Duthie, C.-A., Stewart, R. D., Watson, M., Dewhurst, R., Roehe, R. & Walker, A. W., 19 Nov 2019, (First published) In: Animal Microbiome. 1, p. 1-14 14 p., 16.Research output: Contribution to journal › Article › peer-review
Open AccessFile39 Link opens in a new tab Citations (Scopus)48 Downloads (Pure) -
2018
Improving the inference of co-occurence networks in the bovine rumen microbiome
Zheng, H., Wang, H., Dewhurst, R. & Roehe, R., 21 Nov 2018, (First published) In: IEEE/ACM Transactions on Computational Biology and Bioinformatics.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Link opens in a new tab Citations (Scopus)74 Downloads (Pure)