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2026
Predicting beef diet nutritional composition and intake from rumen metagenomic profiles
Saez-Torillo, S. N., Danielsson, R., Nguyen, T., Patricia Do Jardim Goncalves Lima, J., Cleveland, M. A., Roehe, R. & Martínez-Álvaro, M., Jun 2026, In: Animal Nutrition. 25, p. 297-309 13 p.Research output: Contribution to journal › Article › peer-review
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2025
The use of ruminal metabolic information to select microbial genes for microbiome-driven breeding to mitigate methane emissions from beef cattle
Roehe, R., Nguyen, T., Lima, J. & Martinez Alvaro, M., 11 Jul 2025, (First published) Animal - Science proceedings. 1 ed. Elsevier, Vol. 16. p. 66-67 049Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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2024
Temporal stability of the rumen microbiome and its longitudinal associations with performance traits in beef cattle
Patricia Do Jardim Goncalves Lima, J., Martinez Alvaro, M., Mattock, J., Auffret, M., Duthie, C.-A., Cleveland, M. A., Dewhurst, R., Watson, M. & Roehe, R., 5 Sept 2024, (First published) In: Scientific Reports. 14, 1, 20772.Research output: Contribution to journal › Article › peer-review
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2023
Identification of intestinal and fecal microbial biomarkers using a porcine social stress model
Nguyen, T., Martinez Alvaro, M., Patricia Do Jardim Goncalves Lima, J., Auffret, M., Rutherford, K., Simm, G., Dewhurst, R., Baima, E. T. & Roehe, R., 9 Nov 2023, (First published) In: Frontiers in Microbiology. 14, 1197371.Research output: Contribution to journal › Article › peer-review
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2021
A heat diffusion multilayer network approach for the identification of functional biomarkers in rumen methane emissions
Wang, M., Wang, H., Zheng, H., Dewhurst, R. & Roehe, R., Aug 2021, In: Methods. 192, p. 57-66 10 p., 2020.09.014 .Research output: Contribution to journal › Article › peer-review
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Taxonomic annotation of 16S rRNA sequences of pig intestinal samples using MG-RAST and QIIME2 generated different microbiota compositions
Lima, J., Manning, T., Rutherford, K. M., Baima, E. T., Dewhurst, R. J., Walsh, P. & Roehe, R., Jul 2021, In: Journal of Microbiological Methods. 186, 106235.Research output: Contribution to journal › Article › peer-review
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2020
Identification of complex rumen microbiome interaction within diverse functional niches as mechanisms affecting the variation of methane emissions in bovine
Martinez Alvaro, M., Auffret, M., Stewart, R. D., Dewhurst, R., Duthie, C.-A., Rooke, J., Wallace, R. J., Shih, B., Freeman, T. C., Watson, M. & Roehe, R., 17 Apr 2020, (First published) In: Frontiers in Microbiology. 11, 659.Research output: Contribution to journal › Article › peer-review
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Identification of microbial genetic capacities and potential mechanisms within the rumen microbiome explaining differences in beef cattle feed efficiency
Auffret, M., Stewart, R., Dewhurst, R., Duthie, C.-A., Watson, M. & Roehe, R., 5 Jun 2020, In: Frontiers in Microbiology. 11, p. 1-16 16 p., 1229.Research output: Contribution to journal › Article › peer-review
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2019
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery: Comprehensive resource of cow rumen genomes and a database of predicted proteins.
Stewart, R., Auffret, M., Warr, A., Walker, A., Roehe, R. & Watson, M., 2 Aug 2019, In: Nature Biotechnology. 37, p. 953-961 9 p.Research output: Contribution to journal › Article › peer-review
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Identification of rumen microbial genes involved in pathways linked to appetite, growth and feed conversion efficiency in cattle
Lima, J., Auffret, M., Stewart, R. D., Dewhurst, R., Duthie, C.-A., Snelling, T. J., Walker, A. W., Freeman, T. C., Watson, M. & Roehe, R., 8 Aug 2019, In: Frontiers in Genetics. 10, 701.Research output: Contribution to journal › Article › peer-review
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Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements
Snelling, T. J., Auffret, M., Duthie, C.-A., Stewart, R. D., Watson, M., Dewhurst, R., Roehe, R. & Walker, A. W., 19 Nov 2019, (First published) In: Animal Microbiome. 1, p. 1-14 14 p., 16.Research output: Contribution to journal › Article › peer-review
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