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  • Ian Mackay
2020

Implementing within-cross genomic prediction to reduce oat breeding costs

Mellers, G., Mackay, I., Cowan, S., Griffiths, I., Martinez-Martin, P., Poland, J. A., Bekele, W., Tinker, N. A., Bentley, A. R. & Howarth, C. J., 17 Mar 2020, In : Plant Genome. 13, 1, e20004.

Research output: Contribution to journalArticle

Open Access
File
1 Downloads (Pure)

Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding

Scott, M. F., Ladejobi, O., Amer, S., Bentley, A. R., Biernaskie, J., Boden, S. A., Clark, M., Dell’Acqua, M., Dixon, L. E., Filippi, C. V., Fradgley, N., Gardner, K. A., Mackay, I. J., O’Sullivan, D., Percival-Alwyn, L., Roorkiwal, M., Singh, R. K., Thudi, M., Varshney, R. K., Venturini, L. & 3 others, Whan, A., Cockram, J. & Mott, R., 3 Jul 2020, In : Heredity.

Research output: Contribution to journalReview article

Open Access
File

Origin specific genomic selection: a simple process to optimize the favorable contribution of parents to progeny

Yang, C. J., Sharma, R., Gorjanc, G., Hearne, S. J., Powell, W. & Mackay, I., 1 Jul 2020, In : G3: Genes, Genomes, Genetics. 10, 7, p. 2445-2455 11 p.

Research output: Contribution to journalArticle

Open Access
File
1 Downloads (Pure)

RNA-seq Reveals Differentially Expressed Genes between Two indica Inbred Rice Genotypes Associated with Drought-Yield QTLs

Ereful, N. C., Liu, L-Y., Greenland, A., Powell, W., Mackay, I. & Leung, H., 28 Apr 2020, In : Agronomy. 10, 5, 621.

Research output: Contribution to journalArticle

Open Access
File
2 Downloads (Pure)
2019

A large-scale pedigree resource of wheat reveals evidence for adaptation and selection by breeders

Fradgley, N., Gardner, K., Cockram, J., Elderfield, J., Hickey, J., Howell, P., Jackson, R. & Mackay, IM., 28 Feb 2019, In : PLoS Biology. 17, 2, 20 p., e3000071.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Reference Genome Anchoring of High-Density Markers for Association Mapping and Genomic Prediction in European Winter Wheat

Ladejobi, O., Mackay, I. J., Poland, J., Praud, S., Hibberd, J. M. & Bentley, A. R., 8 Nov 2019, In : Frontiers in Plant Science. 10, 1278.

Research output: Contribution to journalArticle

Open Access
File

Statistical methods for plant breeding

Mackay, IM., Piepho, H-P. & Garcia, A., 2019, Handbook of Statistical Genetics. Balding, D., Moltka, I. & Marioni, J. (eds.). 4 ed. Wiley, p. 501-530 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The effects of training population design on genomic prediction accuracy in wheat

Edwards, S., Buntjer, J., Jackson, R., Bentley, A., Lage, J., Byrne, E., Burt, C., Jack, P., Berry, S., Flatman, E., Poupard, B., Smith, S., Hayes, C., Gaynor, C., Gorjanc, G., Howell, P., Ober, E., Mackay, I. & Hickey, J., Jul 2019, In : Theoretical and Applied Genetics. 132, 7, p. 1943–1952 10 p.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
4 Downloads (Pure)
2018

Assessing European wheat sensitivities to Parastagonospora nodorum necrotrophic effectors and fine-mapping the Snn3-B1 locus conferring sensitivity to the effector SnTox3

Downie, R., Bouvet, L., Furuki, E., Gosman, N., Gardner, K., Mackay, I., Campos Mantello, C., Mellers, G., Phan, H., Rose, G., Tan, K-C., Oliver, R. & Cockram, J., 4 Jul 2018, In : Frontiers in Plant Science. 9, 12 p., 881.

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

Functional mapping of quantitative trait loci (QTLs) associated with plant performance in a wheat MAGIC mapping population

Camargo, A., Mackay, I., Mott, R., Han, J., Doonan, J., Askew, K., Corke, F., Williams, K. & Bentley, A., 9 Jul 2018, In : Frontiers in Plant Science. 9, 15 p., 887.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Genetic mapping populations for conducting high-resolution trait mapping in plants

Cockram, J. & Mackay, I., 2018, Advances in Biochemical Engineering/Biotechnology. Varshney, R., Pandey, M. & Chitikineni, A. (eds.). Berlin: Springer, p. 109-138 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

18 Citations (Scopus)

Genomic index selection provides a pragmatic framework for setting and refining multi-objective breeding targets in Miscanthus

Slavov, G., Davey, C., Bosch, M., RObson, P., Donnison, I. & Mackay, I., 23 Oct 2018, In : Annals of Botany. XX, p. 1-9 9 p.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)
2017

Advances in wheat breeding techniques

Bentley, A. & Mackay, I., 31 Oct 2017, Achieving sustainable cultivation of wheat: Breeding, quality traits, pests and diseases. Langdridge, P. (ed.). 1 ed. London: Burleigh Dodds Science Publishing, Vol. 1. p. 53-76 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

A two-part strategy for using genomic selection to develop inbred lines

Gaynor, C., Gorjanc, G., Bentley, A., Ober, E., Howell, P., Jackson, R., Mackay, I. & Hickey, J., 3 Aug 2017, In : Crop Science. 57, 5, p. 2372-2386

Research output: Contribution to journalReview article

Open Access
35 Citations (Scopus)

Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery

Implementing Genomic Selection in CGIAR Breeding Programs Workshop Participants, 1 Sep 2017, In : Nature Genetics. 49, 9, p. 1297 - 1303 7 p.

Research output: Contribution to journalArticle

Open Access
File
71 Citations (Scopus)
21 Downloads (Pure)

Starch granule morphology in oat endosperm

Saccomanno, B., Chambers, A., Hayes, A., Mackay, IM., McWilliams, S. & Trafford, K., 2017, In : Journal of Cereal Science. 73, p. 46-54

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)
2016
Open Access
36 Citations (Scopus)

Analysis of allelic imbalance in rice hybrids under water stress and association of asymmetrically expressed genes with drought-response QTLs

Ereful, NC., Liu, L-Y., Tsai, E., Kao, S-M., Dixit, S., Mauleon, R., Malabanan, K., Thomson, M., Laurena, A., Lee, D., Mackay, I., Greenland, A., Powell, W. & Leung, H., 2016, In : Rice. 9, 50, 15 p.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
15 Downloads (Pure)

Determining phenological patterns associated with the onset of senescence in a wheat MAGIC mapping population

Camargo, A., Mott, R., Gardner, K., Mackay, I., Corke, F., Doonan, J., Kim, J. & Bentley, A., 24 Oct 2016, In : Frontiers in Plant Science. 7, p. 12

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Maximizing the potential of multi-parental crop populations

Ladejobi, O., Elderfield, J., Gardner, K., Gaynor, C., Hickey, J., Hibberd, J., Mackay, I. & Bentley, A., Dec 2016, In : Applied and Translational Genomics. 11, p. 9-17

Research output: Contribution to journalArticle

Open Access
16 Citations (Scopus)

SSR markers indicate a common origin of self-pollinating dwarf coconut in South-East Asia under domestication

Perera, L., Baudouin, L. & Mackay, I., Nov 2016, In : Scientia Horticulturae. 211, p. 255-262

Research output: Contribution to journalArticle

5 Citations (Scopus)

Using genetic distance to infer the accuracy of genomic prediction

Scutari, M., Mackay, I. & Balding, D., 2 Sep 2016, In : PLoS Genetics. 12, 9, 19 p., e1006288.

Research output: Contribution to journalArticle

Open Access
30 Citations (Scopus)
2015

Differentially penalized regression to predict agronomic traits from metabolites and markers

Ward, J., Rakszegi, M., Bedő, Z., Shewry, P. & Mackay, I., 26 Feb 2015, In : BMC Genetics. 16, 19, 7 p.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Efficiently tracking selection in a multiparental population: the case of earliness in wheat

Thépot, S., Restoux, G., Goldringer, I., Hospital, F., Gouache, D., Mackay, I. & Enjalbert, J., 2015, In : Genetics. 199, p. 609-623

Research output: Contribution to journalArticle

25 Citations (Scopus)

Fine-mapping the wheat Snn1 locus conferring sensitivity 1 to the Parastagonospora nodorum necrotrophic effector SnTox1 using an eight founder multi-parent advanced generation intercross population

Cockram, J., Scuderi, A., Barber, T., Furuki, E., Gardner, K., Gosman, N., Kowalczyk, R., Phan, H., Rose, G. A., Tan, K-C., Oliver, R. & Mackay, I., 1 Nov 2015, In : G3: Genes, Genomes, Genetics. 5, p. 2257-2266

Research output: Contribution to journalArticle

Open Access
15 Citations (Scopus)

GplusE: beyond genomic selection

Mackay, I., Ober, E. & Hickey, J., 25 Mar 2015, In : Food and Energy Security. 4, 1, p. 25-35

Research output: Contribution to journalArticle

Open Access
14 Citations (Scopus)

Implications of using genomic prediction within a high density SNP dataset to predict DUS traits in barley

Mackay, I. & Jones, H., Dec 2015, In : Theoretical and Applied Genetics. 128, 12, p. 2461–2470

Research output: Contribution to journalArticle

6 Citations (Scopus)

Interest of a multiparental and outcrossing wheat population for fine mapping

Thépot, S., Restoux, G., Hospital, F., Gouache, D., Mackay, I., Goldringer, I. & Enjalbert, J., 2015, Advances in Wheat Genetics: From Genome to Field. Ogihara, Y., Takumi, S. & Handa, H. (eds.). Springer, p. 331-338 ( Advances in Wheat Genetics: From Genome to Field).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
2014

Agro-morphological variation and nutritional qualitative trait screening among field bean (Vicia faba L. var minor)

Khamassi, K., Mackay, I., Ali, M., Rezgui, S., O’Sullivan, D. & Ben Jeddi, F., 16 Jun 2014, In : Legume Genomics and Genetics. 5, p. 7-24

Research output: Contribution to journalArticle

Open Access

An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation

Mackay, I. J., Bansept-Basler, P., Barber, T., Bentley, A. R., Cockram, J., Gosman, N., Greenland, A. J., Horsnell, R., Howells, R., O'Sullivan, D. M., Rose, G. A. & Howell, P. J., 18 Sep 2014, In : G3: Genes, Genomes, Genetics. 4, 9, p. 1603-10 8 p.

Research output: Contribution to journalArticle

Open Access
92 Citations (Scopus)

Applying association mapping and genomic selection to the dissection of key traits in elite European wheat

Bentley, A., Scutari, M., Gosman, N., Faure, S., Bedford, F., Howell, P., Cockram, J., Rose, G., Barber, T., Irigoyen, J., Horsnell, R., Pumfrey, C., Winnie, E., Schacht, J., Beauchêne, K., Praud, S., Greenland, A., Balding, D. & Mackay, I., Dec 2014, In : TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 127, 12, p. 2619-33 15 p.

Research output: Contribution to journalArticle

51 Citations (Scopus)

Multiple quantitative trait analysis using Bayesian networks

Scutari, M., Howell, P., Balding, D. J. & Mackay, I., Sep 2014, In : Genetics. 198, 1, p. 129-137 9 p.

Research output: Contribution to journalArticle

40 Citations (Scopus)
2013

An introduction to the contemporary breeding of oil seed rape

Wood, T., Teakle, G. & Mackay, I., Nov 2013, In : Lipid Technology. 25, 11, p. 251-254

Research output: Contribution to journalReview article

1 Citation (Scopus)

Evaluation of the use of high-density SNP genotyping to implement UPOV Model 2 for DUS testing in barley

Jones, H., Norris, C., Smith, D., Cockram, J., Lee, D., O'Sullivan, D. M. & Mackay, I., Apr 2013, In : TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 126, 4, p. 901-911 11 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Flowering time

Bentley, A., Jensen, EF., Mackay, I., Hönicka, H., Fladung, M., Hori, K., Yano, M., Mullet, JE., Armstead, IP., Hayes, C., Thorogood, D., Lovatt, A., Morris, R., Pullen, N., Mutasa-Göttgens, E. & Cockram, J., 25 Apr 2013, Genomics and Breeding for Climate-Resilient Crops : Target traits . Kole, C. (ed.). 1 ed. Springer, Vol. 2. p. 1-66

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome-wide analysis of allele specific expression imbalance and copy number variation in rice (Oryza sativa L.) under normal and drought conditions

Ereful, N. C., Malabanan, K., Thomson, M., Merca, FE., Laurena, A., Lee, D., Mackay, I. & Leung, H., 2013, In : Philippine Journal of Crop Science.

Research output: Contribution to journalArticle

Haplotype dictionary for the Rht-1 loci in wheat

Wilhelm, E. P., Mackay, I. J., Saville, R. J., Korolev, A. V., Balfourier, F., Greenland, A. J., Boulton, M. I. & Powell, W., Jul 2013, In : TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 126, 7, p. 1733-47 15 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Improving the efficiency of genomic selection

Scutari, M., Mackay, I. & Balding, D., Aug 2013, In : Statistical Applications in Genetics and Molecular Biology. 12, 4, p. 517-27 11 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Remnant genetic diversity detected in an ancient crop: Triticum dicoccon Schrank landraces from Asturias, Spain

Leigh, F. J., Oliveira, H. R., Mackay, I., Jones, H., Smith, L., Wolters, P., Charles, M., Jones, M., Powell, W., Brown, T. A. & Jones, G., Jan 2013, In : Genetic Resources and Crop Evolution. 60, 1, p. 355-365 11 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Rht-1 and Ppd-D1 associations with height, GA sensitivity, and days to heading in a worldwide bread wheat collection

Wilhelm, E. P., Boulton, M. I., Al-Kaff, N., Balfourier, F., Bordes, J., Greenland, A., Powell, W. & Mackay, I., Sep 2013, In : TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 126, 9, p. 2233-2243 11 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)

Short, natural, and extended photoperiod response in BC2F4 lines of bread wheat with different photoperiod-1 (Ppd-1) alleles

Bentley, A. R., Horsnell, R., Werner, C. P., Turner, A. S., Rose, G. A., Bedard, C., Howell, P., Wilhelm, E. P., Mackay, I. J., Howells, R. M., Greenland, A., Laurie, D. A. & Gosman, N., Apr 2013, In : Journal of Experimental Botany. 64, 7, p. 1783-93 11 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Using diversity of the chloroplast genome to examine evolutionary history of wheat species

Leigh, F., Mackay, I., Oliveira, H. R., Gosman, N., Horsnell, R., Jones, H., White, J., Powell, W. & Brown, T. A., Aug 2013, In : Genetic Resources and Crop Evolution. 60, 6, p. 1831–1842 12 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2012

Genotyping SSR length variants by isothermal DNA amplification

Lee, D., Ialicicco, M., Akkinepalli, H., Morreale, G., Liu, Y., Leung, H., Scippa, G. S., Greenland, A. & Mackay, I., 17 Oct 2012, In : Genome. 55, 09, p. 691-695 5 p.

Research output: Contribution to journalArticle

Morphological and molecular diversity of Tunisian chickpea

Khamassi, K., Bettaieb Ben Kaab, L., Khoufi, S., Chaabane, R., da Silva, J. A., Mackay, I. J. & Ben Naceur, M., 2012, In : European Journal of Horticultural Science. 77, 1, p. 31-40 10 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Sequence-based marker development in wheat: advances and applications to breeding

Paux, E., Sourdille, P., Mackay, I. & Feuillet, C., Oct 2012, In : Biotechnology Advances. 30, 5, p. 1071-1088 18 p.

Research output: Contribution to journalReview article

81 Citations (Scopus)

Snapshots of gene expression in rice: limitations for allelic expression imbalance determination

Akkinepalli, H., Ereful, N., Liu, Y., Malabanan, K., Howells, R., Stamati, K., Powell, W., Leung, H., Greenland, A., Mackay, I. & Lee, D., May 2012, In : Mammalian Genome. 55, 5, p. 400-6 7 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2011

Application of QUIZ for GM quantification in food

La Mura, M., Allnutt, T. R., Greenland, A., Mackay, I. & Lee, D., 15 Apr 2011, In : Food Chemistry. 125, 4, p. 1340-1344 5 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Reanalyses of the historical series of UK variety trials to quantify the contributions of genetic and environmental factors to trends and variability in yield over time

Mackay, I., Horwell, A., Garner, J., White, J., McKee, J. & Philpott, H., 2011, In : Theoretical and Applied Genetics. 122, 1, p. 225-238 14 p.

Research output: Contribution to journalArticle

84 Citations (Scopus)