Find Research Outputs

Search in all content

Filters for Research Output

Search concepts
Selected filters

Publication Year

  • 2020
  • 2019
  • 2018
  • 2017
  • 2016
  • 2015
  • 2014
  • 2013
  • 2012
  • 2011

Author

  • Rainer Roehe
2020

A knowledge-driven network-based analytical framework for the identification of rumen metabolites

Wang, M., Wang, H., Zheng, H., Dewhurst, R. J. & Roehe, R., Jul 2020, In : IEEE Transactions on Nanobioscience. 19, 3, p. 518-526 9 p.

Research output: Contribution to journalArticle

Open Access
File
5 Downloads (Pure)

Identification of complex rumen microbiome interaction within diverse functional niches as mechanisms affecting the variation of methane emissions in bovine

Martinez Alvaro, M., Auffret, MD., Stewart, R. D., Dewhurst, RJ., Duthie, C-A., Rooke, JA., Wallace, R. J., Shih, B., Freeman, T. C., Watson, M. & Roehe, R., 17 Apr 2020, In : Frontiers in Microbiology. 11, 659.

Research output: Contribution to journalArticle

Open Access
File
1 Downloads (Pure)
Open Access
File
15 Downloads (Pure)
Open Access
File
4 Downloads (Pure)
2019

A knowledge driven mutual information-based analytical framework for the identification of rumen metabolites

Wang, M., Zheng, H., Wang, H., Dewhurst, R. J. & Roehe, R., Nov 2019, Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019. Yoo, I., Bi, J. & Hu, X. T. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 255-260 6 p. 8983182. (Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

A Phylogeny-aware Feature Ranking for Classification of Cattle Rumen Microbiome

Wassan, J. T., Zheng, H., Wang, H., Browne, F., Walsh, P., Manning, T., Dewhurst, R. & Roehe, R., Nov 2019, Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019. Yoo, I., Bi, J. & Hu, X. T. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1900-1906 7 p. 8983040. (Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automated Object Tracking for Animal Behaviour Studies

Manning, T., Somarriba, M., Roehe, R., Turner, S., Wang, H., Zheng, H., Kelly, B., Lynch, J. & Walsh, P., Nov 2019, Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019. Yoo, I., Bi, J. & Hu, X. T. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1876-1883 8 p. 8983195. (Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery: Comprehensive resource of cow rumen genomes and a database of predicted proteins.

Stewart, R., Auffret, MD., Warr, A., Walker, A., Roehe, R. & Watson, M., 2 Aug 2019, In : Nature Biotechnology. 37, p. 953-961 9 p.

Research output: Contribution to journalArticle

Open Access
File
18 Citations (Scopus)
37 Downloads (Pure)

Identification of rumen microbial genes involved in pathways linked to appetite, growth and feed conversion efficiency in cattle

Lima, J., Auffret, M., Stewart, R. D., Dewhurst, RJ., Duthie, C-A., Snelling, T. J., Walker, A. W., Freeman, T. C., Watson, M. & Roehe, R., 8 Aug 2019, In : Frontiers in Genetics. 10, 701.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
20 Downloads (Pure)

Nutritional strategies to reduce methane emissions from cattle: effects on meat eating quality and retail shelf life of loin steaks

Richardson, I., Duthie, C-A., Hyslop, JJ., Rooke, JA. & Roehe, R., Jul 2019, In : Meat Science. 153, p. 51-57 7 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
7 Downloads (Pure)

Relationships between feeding behaviour, activity, dominance and feed efficiency in finishing beef steers

Haskell, MJ., Rooke, JA., Roehe, R., Turner, SP., Hyslop, JJ., Waterhouse, A. & Duthie, C-A., Jan 2019, In : Applied Animal Behaviour Science. 210, p. 9-15 7 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
3 Downloads (Pure)

Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements

Snelling, T. J., Auffret, MD., Duthie, C-A., Stewart, R. D., Watson, M., Dewhurst, RJ., Roehe, R. & Walker, A. W., 19 Nov 2019, In : Animal Microbiome. 1, 16, p. 1-14 14 p., 16.

Research output: Contribution to journalArticle

Open Access
File

The effects of a composite chronic stress treatment on fear responses and attention bias in beef cattle

Somarriba Soley, M. A. S., Lonis, W., Roehe, R., Macrae, A., Dewhurst, RJ., Duthie, C-A., Haskell, MJ. & Turner, SP., 5 Aug 2019, p. 142. 1 p.

Research output: Contribution to conferencePoster

Open Access
2018

Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present and future

Huws, SA., Creevey, C., Oyama, LB., Mizrahi, I., Denman, SE., Popova, M., Munoz-tamayo, R., Forano, E., Waters, SM., Hess, M., Tapio, I., Smidt, H., Krizsan, S., Yanez-Ruiz, DR., Belanche, A., Guan, LL., Gruninger, RJ., McAllister, T., Newbold, J., Roehe, R. & 17 others, Dewhurst, RJ., Snelling, TJ., Watson, M., Suen, G., Hart, E., Kingston-Smith, A., Scollan, N., Do Prado, RM., Pilau, E., Mantovani, HC., Attwood, GT., Edwards, JE., McEwan, N., Morrison, S., Mayorga, O., Elliott, C. & Morgavi, DP., 25 Sep 2018, In : Frontiers in Microbiology. 9, p. 21-61 33 p.

Research output: Contribution to journalReview article

Open Access
File
38 Citations (Scopus)
5 Downloads (Pure)

An integrative framework for functional analysis of cattle rumen microbiomes

Wassan, J. T., Zheng, H., Browne, F., Bowen, J. M., Walsh, P., Roehe, R., Dewhurst, RJ., Palu, C., Kelly, B. & Wang, H., 12 Mar 2018, Proceedings of 2018 IEEE International Conference on Bioinformatics and Biomedicine. Institute of Electrical and Electronics Engineers Inc., p. 1854 1860 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen

Stewart, RD., Auffret, MD., Warr, A., Wiser, AH., Press, MO., Langford, KW., Liachko, I., Snelling, TJ., Dewhurst, RJ., Walker, AW., Roehe, R. & Watson, M., 28 Feb 2018, In : Nature Communications. 9, 870.

Research output: Contribution to journalArticle

Open Access
File
98 Citations (Scopus)
16 Downloads (Pure)

Effects of dietary nitrate and lipid supplementation on the rumen microbiota associated with methane production

Bowen, J. M., Cormican, P., Lister, S. J., McCabe, M. S., Roehe, R. & Dewhurst, RJ., 9 Apr 2018.

Research output: Contribution to conferencePaper

Fat accretion measurements strengthen the relationship between feed conversion efficiency and nitrogen isotopic discrimination while rumen microbial genes contribute little

Meale, SJ., Auffret, MD., Watson, M., Morgavi, DP., Cantalapiedra-Hijar, G., Duthie, C-A., Roehe, R. & Dewhurst, RJ., 1 Mar 2018, In : Scientific Reports. 8, 1, 7 p., 3854.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
4 Downloads (Pure)

Identification, comparison and validation of robust rumen microbial biomarkers for methane emissions using diverse Bos taurus breeds and basal diets

Auffret, MD., Stewart, R., Dewhurst, RJ., Duthie, C-A., Rooke, JA., Wallace, RJ., Freeman, TC., Snelling, TJ., Watson, M. & Roehe, R., 9 Jan 2018, In : Frontiers in Microbiology. 8, 15 p., 2642.

Research output: Contribution to journalArticle

Open Access
File
18 Citations (Scopus)
4 Downloads (Pure)
Open Access
File
7 Downloads (Pure)

MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)

Stewart, R. D., Auffret, M., Snelling, T. J., Roehe, R. & Watson, M., 10 Nov 2018, In : Bioinformatics. 3 p., bty905.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
18 Downloads (Pure)

Social network properties predict chronic aggression in commercial pig systems

Foister, S., Doeschl-Wilson, A., Roehe, R., Arnott, G., Boyle, L. & Turner, SP., 4 Oct 2018, In : PLoS ONE. 13, 10, 18 p., e0205122.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
3 Downloads (Pure)

Temperament and dominance relate to feeding behaviour and activity in beef cattle: implications for performance and methane emissions

Llonch, P., Somarriba, M., Duthie, C-A., Troy, SM., Roehe, R., Rooke, JA., Haskell, MJ. & Turner, SP., 2 Apr 2018, In : Animal. 12, 12, p. 2639 - 2648 10 p.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
24 Downloads (Pure)
2017

Aggressive behaviour at regrouping is a poor predictor of chronic aggression in stable social groups

Turner, SP., Nevison, IM., Desire, S., Camerlink, I., Roehe, R., Ison, SH., Farish, M., Jack, MC. & D'Eath, RB., 10 Feb 2017, In : Applied Animal Behaviour Science. 191, p. 98 - 106 9 p.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
3 Downloads (Pure)

Breeding for pig welfare: opportunities and challenges

Turner, SP., Camerlink, I., Baxter, EM., D'Eath, RB., Desire, S., Roehe, R. & Spinka, M. (ed.), 2017, Advances in Pig Welfare: Herd and Flock Welfare. Spinka, M. (ed.). Woodhead Publishing, p. 399 - 414 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Integrated metagenomic analyses of the rumen microbiome of cattle reveals key biological mechanisms associated with methane traits

Wang, H., Zheng, H., Browne, F., Roehe, R., Dewhurst, RJ., Engel, F., Hemmje, M., Lu, X. & Walsh, P., 9 Jun 2017, In : Methods. 124, p. 108 - 119 12 p.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
22 Downloads (Pure)

The effect of dietary addition of nitrate or increase in lipid concentrations, alone or in combination, on performance and methane emissions of beef cattle

Duthie, C-A., Troy, SM., Hyslop, JJ., Ross, DW., Roehe, R. & Rooke, JA., 13 Jul 2017, In : Animal. 12, 2, p. 280 - 287 8 p.

Research output: Contribution to journalArticle

Open Access
File
11 Citations (Scopus)

The impact of divergent breed types and diets on methane emissions, rumen characteristics and performance of finishing beef cattle

Duthie, C-A., Haskell, MJ., Hyslop, JJ., Waterhouse, A., Wallace, RJ., Roehe, R. & Rooke, JA., 22 Feb 2017, In : Animal. 11, 10, p. 1762 - 1771 10 p.

Research output: Contribution to journalArticle

Open Access
File
9 Citations (Scopus)
16 Downloads (Pure)

The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle

Auffret, MD., Dewhurst, RJ., Duthie, C-A., Rooke, JA., Wallace, RJ., Freeman, TC., Stewart, R., Watson, M. & Roehe, R., 11 Dec 2017, In : Microbiome. 5, 159.

Research output: Contribution to journalArticle

Open Access
File
25 Citations (Scopus)
2 Downloads (Pure)
2016

A comparison of methane emissions from beef cattle measured using methane hoods with those measured using respiration chambers

Troy, SM., Duthie, C-A., Ross, DW., Hyslop, JJ., Roehe, R., Waterhouse, A. & Rooke, JA., Jan 2016, In : Animal Feed Science and Technology. 211, p. 6 - 4 1 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
4 Downloads (Pure)

Analysis of rumen microbial community in cattle through the integration of metagenomic and network-based approaches

Wang, H., Zheng, H., Browne, F., Roehe, R., Dewhurst, R. J., Engel, F., Hemmje, M. & Walsh, P., 2016, 2016 Ieee International Conference on Bioinformatics and Biomedicine (Bibm).

Research output: Chapter in Book/Report/Conference proceedingChapter

A network analysis of methane and feed conversion genes in the rumen microbial community

Browne, F., Wang, H., Zheng, H., Roehe, R., Dewhurst, R. J. & Walsh, P., 2016, 2016 Ieee International Conference on Bioinformatics and Biomedicine (Bibm).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
File
10 Citations (Scopus)
5 Downloads (Pure)

Bovine host genetic variation influences rumen microbial methane production with best selection criterion for low methane emitting and efficiently feed converting hosts based on metagenomic gene abundance

Roehe, R., Dewhurst, RJ., Duthie, C-A., Rooke, JA., McKain, N., Ross, DW., Hyslop, JJ., Waterhouse, A., Freeman, TC., Watson, M. & Wallace, RJ., 18 Feb 2016, In : PLoS Genetics. 12, 2, p. 3 - 9 7 p.

Research output: Contribution to journalArticle

Open Access
File
116 Citations (Scopus)
2 Downloads (Pure)

Changes in feed intake during isolation stress in respiration chambers may impact methane emissions assessment

Llonch, P., Troy, SM., Duthie, C-A., Somarriba, M., Rooke, JA., Haskell, MJ., Roehe, R. & Turner, SP., 2016, In : Animal Production Science. 58, 6, p. 1011-1016

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
4 Downloads (Pure)

Incorporating meat quality in sheep breeding programmes: potential of non-invasive technologies

Lambe, NR., Clelland, N., Roehe, R., McLean, KA., Gordon, J., Evans, D. & Bunger, L., 2016, p. 638.

Research output: Contribution to conferencePaper

Prediction of reduction in aggressive behaviour of growing pigs using skin lesion traits as selection criteria

Desire, S., Turner, SP., D'Eath, RB., Doeschl-Wilson, AB., Lewis, CRG. & Roehe, R., 9 Feb 2016, In : Animal. 10, 8, p. 1243 - 1253

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
1 Downloads (Pure)
2015

Analysis of the phenotypic link between behavioural traits at mixing and increased long-term social stability in group-housed pigs

Desire, S., Turner, SP., D'Eath, RB., Doeschl-Wilson, AB., Lewis, CRG. & Roehe, R., 2015, In : Applied Animal Behaviour Science. 166, p. 52 - 62 11 p.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)
7 Downloads (Pure)

Effectiveness of nitrate addition and increased oil content as methane mitigation strategies for beef cattle fed two contrasting basal diets

Troy, SM., Duthie, C-A., Hyslop, JJ., Roehe, R., Ross, DW., Wallace, RJ., Waterhouse, A. & Rooke, JA., 2015, In : Journal of Animal Science. 93, 4, p. 1815 - 1823 9 p.

Research output: Contribution to journalArticle

30 Citations (Scopus)
7 Citations (Scopus)

Impact of adding nitrate or increasing the lipid content of two contrasting diets on blood methaemoglobin and performance of two breeds of finishing beef steers

Duthie, C-A., Rooke, JA., Troy, SM., Hyslop, JJ., Ross, DW., Waterhouse, A. & Roehe, R., 2015, In : Animal. 10, 5, p. 786 - 795 10 p.

Research output: Contribution to journalArticle

Open Access
File
17 Citations (Scopus)
4 Downloads (Pure)

The rumen microbial metagenome associated with high methane production in cattle

Wallace, RJ., Rooke, JA., McKain, N., Duthie, C-A., Hyslop, JJ., Ross, DW., Waterhouse, A., Watson, M. & Roehe, R., 2015, In : BMC Genomics. 16, 839.

Research output: Contribution to journalArticle

Open Access
File
116 Citations (Scopus)
5 Downloads (Pure)
2014

Archaeal abundance in post-mortem ruminal digesta may help predict methane emissions from beef cattle

Wallace, RJ., Rooke, JA., Duthie, C-A., Hyslop, JJ., Ross, DW., McKain, N., Motta de Souza, S., Snelling, TJ., Waterhouse, A. & Roehe, R., 2014, In : Scientific Reports. 4, p. 2 - 5 4 p.

Research output: Contribution to journalArticle

Open Access
File
59 Citations (Scopus)

Estimation of residual energy intake and its genetic background during the growing period in pigs

Shirali, M., Doeschl-Wilson, A., Duthie, C-A., Knap, PW., Kanis, E., van Arendonk, JAM. & Roehe, R., 7 Aug 2014, In : Livestock Science. 168, p. 17 - 25 9 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Evaluation of the laser methane detector to estimate methane emissions from ewes and steers

Ricci, P., Chagunda, MGG., Rooke, JA., Houdijk, JGM., Duthie, C-A., Hyslop, J., Roehe, R. & Waterhouse, A., 2014, In : Journal of Animal Science. 92, 11, p. 5239 - 5250 12 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Heterogeneous variances and genetics by environment interactions in genetic evaluation of crossbred lambs

Marquez, GC., Haresign, W., Davies, MH., Roehe, R., Bunger, L., Simm, G. & Lewis, RM., 19 Nov 2014, In : Animal. 9, 3, p. 380 - 387 8 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
3 Downloads (Pure)

Hydrogen and methane emissions from beef cattle and their rumen microbial community vary with diet, time after feeding and genotype

Rooke, JA., Wallace, RJ., Duthie, C-A., McKain, N., Motta de Souza, S., Hyslop, JJ., Ross, DW., Waterhouse, A. & Roehe, R., 2014, In : British Journal of Nutrition. 112, 3, p. 398 - 407 10 p.

Research output: Contribution to journalArticle

Open Access
File
50 Citations (Scopus)
18 Downloads (Pure)
2013

Genetic evaluation of days to harvest in crossbred lambs

Marquez, GC., Haresign, W., Davies, MH., Notter, DR., Roehe, R., Bunger, L., Simm, G. & Lewis, RM., Nov 2013, In : Journal of Animal Science. 91, 11, p. 5153 - 5160 8 p.

Research output: Contribution to journalArticle

Index selection in terminal sires improves lamb performance at finishing

Marquez, GC., Haresign, W., Davies, MH., Roehe, R., Bunger, L., Simm, G. & Lewis, RM., 2013, In : Journal of Animal Science. 91, 1, p. 38 - 43 6 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Novel insight into the genomic architecture of feed and nitrogen efficiency measured by residual energy intake and nitrogen excretion in growing pigs

Shirali, M., Duthie, C-A., Doeschl-Wilson, A., Knap, P. W., Kanis, E., Van Arendonk, J. A. M. & Roehe, R., 20 Dec 2013, In : BMC Genetics. 14, 121.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)