Abstract
Polyporales is strongly supported as a clade of Agaricomycetes, but the lack of a consensus higher-level classification within the group is a barrier to further taxonomic revision. We amplified nrLSU, nrITS, and rpb1 genes across the Polyporales, with a special focus on the latter. We combined the new sequences with molecular data generated during the PolyPEET project and performed Maximum Likelihood and Bayesian phylogenetic analyses. Analyses of our final 3-gene dataset (292 Polyporales taxa) provide a phylogenetic overview of the order that we translate here into a formal family-level classification. Eighteen clades are assigned a family name, including three families described as new (Cerrenaceae fam. nov., Gelatoporiaceae fam. nov., Panaceae fam. nov.) and fifteen others (Dacryobolaceae, Fomitopsidaceae, Grifolaceae, Hyphodermataceae, Incrustoporiaceae, Irpicaceae, Ischnodermataceae, Laetiporaceae, Meripilaceae, Meruliaceae, Phanerochaetaceae, Podoscyphaceae, Polyporaceae, Sparassidaceae, Steccherinaceae). Three clades are given informal names (/hypochnicium,/climacocystis and/fibroporia + amyloporia). Four taxa (Candelabrochete africana, Mycoleptodonoides vassiljevae, Auriporia aurea, and Tyromyces merulinus) cannot be assigned to a family within the Polyporales. The classification proposed here provides a framework for further taxonomic revision and will facilitate communication among applied and basic scientists. A survey of morphological, anatomical, physiological, and genetic traits confirms the plasticity of characters previously emphasized in taxonomy of Polyporales.
| Original language | English |
|---|---|
| Pages (from-to) | 798-824 |
| Number of pages | 27 |
| Journal | Fungal Biology |
| Volume | 121 |
| Issue number | 9 |
| Early online date | 16 Jun 2017 |
| DOIs | |
| Publication status | Print publication - Sep 2017 |
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Bibliographical note
Copyright © 2017 British Mycological Society. All rights reserved.Keywords
- Bayes Theorem
- DNA, Fungal/chemistry
- Fungal Proteins/chemistry
- Genome, Fungal/genetics
- Likelihood Functions
- Phylogeny
- Polymerase Chain Reaction
- Polyporales/classification
- RNA Polymerase II/genetics
- Sequence Alignment
Cite this
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A revised family-level classification of the Polyporales (Basidiomycota). / Justo, Alfredo; Miettinen, Otto; Floudas, Dimitrios; Ortiz-Santana, Beatriz; Sjökvist, Elisabet; Lindner, Daniel; Nakasone, Karen; Niemelä, Tuomo; Larsson, Karl-Henrik; Ryvarden, Leif; Hibbett, David S.
In: Fungal Biology, Vol. 121, No. 9, 09.2017, p. 798-824.Research output: Contribution to journal › Article › Research › peer-review
TY - JOUR
T1 - A revised family-level classification of the Polyporales (Basidiomycota)
AU - Justo, Alfredo
AU - Miettinen, Otto
AU - Floudas, Dimitrios
AU - Ortiz-Santana, Beatriz
AU - Sjökvist, Elisabet
AU - Lindner, Daniel
AU - Nakasone, Karen
AU - Niemelä, Tuomo
AU - Larsson, Karl-Henrik
AU - Ryvarden, Leif
AU - Hibbett, David S
N1 - Copyright © 2017 British Mycological Society. All rights reserved.
PY - 2017/9
Y1 - 2017/9
N2 - Polyporales is strongly supported as a clade of Agaricomycetes, but the lack of a consensus higher-level classification within the group is a barrier to further taxonomic revision. We amplified nrLSU, nrITS, and rpb1 genes across the Polyporales, with a special focus on the latter. We combined the new sequences with molecular data generated during the PolyPEET project and performed Maximum Likelihood and Bayesian phylogenetic analyses. Analyses of our final 3-gene dataset (292 Polyporales taxa) provide a phylogenetic overview of the order that we translate here into a formal family-level classification. Eighteen clades are assigned a family name, including three families described as new (Cerrenaceae fam. nov., Gelatoporiaceae fam. nov., Panaceae fam. nov.) and fifteen others (Dacryobolaceae, Fomitopsidaceae, Grifolaceae, Hyphodermataceae, Incrustoporiaceae, Irpicaceae, Ischnodermataceae, Laetiporaceae, Meripilaceae, Meruliaceae, Phanerochaetaceae, Podoscyphaceae, Polyporaceae, Sparassidaceae, Steccherinaceae). Three clades are given informal names (/hypochnicium,/climacocystis and/fibroporia + amyloporia). Four taxa (Candelabrochete africana, Mycoleptodonoides vassiljevae, Auriporia aurea, and Tyromyces merulinus) cannot be assigned to a family within the Polyporales. The classification proposed here provides a framework for further taxonomic revision and will facilitate communication among applied and basic scientists. A survey of morphological, anatomical, physiological, and genetic traits confirms the plasticity of characters previously emphasized in taxonomy of Polyporales.
AB - Polyporales is strongly supported as a clade of Agaricomycetes, but the lack of a consensus higher-level classification within the group is a barrier to further taxonomic revision. We amplified nrLSU, nrITS, and rpb1 genes across the Polyporales, with a special focus on the latter. We combined the new sequences with molecular data generated during the PolyPEET project and performed Maximum Likelihood and Bayesian phylogenetic analyses. Analyses of our final 3-gene dataset (292 Polyporales taxa) provide a phylogenetic overview of the order that we translate here into a formal family-level classification. Eighteen clades are assigned a family name, including three families described as new (Cerrenaceae fam. nov., Gelatoporiaceae fam. nov., Panaceae fam. nov.) and fifteen others (Dacryobolaceae, Fomitopsidaceae, Grifolaceae, Hyphodermataceae, Incrustoporiaceae, Irpicaceae, Ischnodermataceae, Laetiporaceae, Meripilaceae, Meruliaceae, Phanerochaetaceae, Podoscyphaceae, Polyporaceae, Sparassidaceae, Steccherinaceae). Three clades are given informal names (/hypochnicium,/climacocystis and/fibroporia + amyloporia). Four taxa (Candelabrochete africana, Mycoleptodonoides vassiljevae, Auriporia aurea, and Tyromyces merulinus) cannot be assigned to a family within the Polyporales. The classification proposed here provides a framework for further taxonomic revision and will facilitate communication among applied and basic scientists. A survey of morphological, anatomical, physiological, and genetic traits confirms the plasticity of characters previously emphasized in taxonomy of Polyporales.
KW - Bayes Theorem
KW - DNA, Fungal/chemistry
KW - Fungal Proteins/chemistry
KW - Genome, Fungal/genetics
KW - Likelihood Functions
KW - Phylogeny
KW - Polymerase Chain Reaction
KW - Polyporales/classification
KW - RNA Polymerase II/genetics
KW - Sequence Alignment
U2 - 10.1016/j.funbio.2017.05.010
DO - 10.1016/j.funbio.2017.05.010
M3 - Article
VL - 121
SP - 798
EP - 824
JO - Fungal Biology
JF - Fungal Biology
SN - 1878-6146
IS - 9
ER -