Arabidopsis nucleolar protein database (AtNoPDB)

John W.S. Brown, Peter J. Shaw, Paul Shaw, David F. Marshall

Research output: Contribution to journalArticleResearchpeer-review

57 Citations (Scopus)

Abstract

The Arabidopsis Nucleolar Protein Database (http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/home) provides information on 217 proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture. The database is organized on the basis of the Arabidopsis gene identifier number. The information provided includes protein description, protein class, whether or not the plant protein has a homologue in the most recent human nucleolar proteome and the results of reciprocal BLAST analysis of the human proteome. In addition, for one-third of the 217 Arabidopsis nucleolar proteins, localization images are available from analysis of full-length cDNA-green fluorescent protein (GFP) fusions and the strength of signal in different parts of the cell-nucleolus, nucleolus-associated structures, nucleoplasm, nuclear bodies and extra-nuclear-is provided. For each protein, the most likely human and yeast orthologues, where identifiable through BLASTX analysis, are given with links to relevant information sources.
Original languageEnglish
JournalNucleic Acids Research
Volume33
Issue numberDATABASE ISS.
DOIs
Publication statusPrint publication - 1 Jan 2005
Externally publishedYes

Fingerprint

Arabidopsis Proteins
Protein Databases
Nuclear Proteins
Proteome
Arabidopsis
Proteins
Cell Nucleolus
Plant Proteins
Green Fluorescent Proteins
Proteomics
Complementary DNA
Cell Culture Techniques
Yeasts
Databases
Genes

Cite this

Brown, John W.S. ; Shaw, Peter J. ; Shaw, Paul ; Marshall, David F. / Arabidopsis nucleolar protein database (AtNoPDB). In: Nucleic Acids Research. 2005 ; Vol. 33, No. DATABASE ISS.
@article{04cb7647689f4df3b9a9a72a3000f371,
title = "Arabidopsis nucleolar protein database (AtNoPDB)",
abstract = "The Arabidopsis Nucleolar Protein Database (http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/home) provides information on 217 proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture. The database is organized on the basis of the Arabidopsis gene identifier number. The information provided includes protein description, protein class, whether or not the plant protein has a homologue in the most recent human nucleolar proteome and the results of reciprocal BLAST analysis of the human proteome. In addition, for one-third of the 217 Arabidopsis nucleolar proteins, localization images are available from analysis of full-length cDNA-green fluorescent protein (GFP) fusions and the strength of signal in different parts of the cell-nucleolus, nucleolus-associated structures, nucleoplasm, nuclear bodies and extra-nuclear-is provided. For each protein, the most likely human and yeast orthologues, where identifiable through BLASTX analysis, are given with links to relevant information sources.",
author = "Brown, {John W.S.} and Shaw, {Peter J.} and Paul Shaw and Marshall, {David F.}",
year = "2005",
month = "1",
day = "1",
doi = "10.1093/nar/gki052",
language = "English",
volume = "33",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "DATABASE ISS.",

}

Arabidopsis nucleolar protein database (AtNoPDB). / Brown, John W.S.; Shaw, Peter J.; Shaw, Paul; Marshall, David F.

In: Nucleic Acids Research, Vol. 33, No. DATABASE ISS., 01.01.2005.

Research output: Contribution to journalArticleResearchpeer-review

TY - JOUR

T1 - Arabidopsis nucleolar protein database (AtNoPDB)

AU - Brown, John W.S.

AU - Shaw, Peter J.

AU - Shaw, Paul

AU - Marshall, David F.

PY - 2005/1/1

Y1 - 2005/1/1

N2 - The Arabidopsis Nucleolar Protein Database (http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/home) provides information on 217 proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture. The database is organized on the basis of the Arabidopsis gene identifier number. The information provided includes protein description, protein class, whether or not the plant protein has a homologue in the most recent human nucleolar proteome and the results of reciprocal BLAST analysis of the human proteome. In addition, for one-third of the 217 Arabidopsis nucleolar proteins, localization images are available from analysis of full-length cDNA-green fluorescent protein (GFP) fusions and the strength of signal in different parts of the cell-nucleolus, nucleolus-associated structures, nucleoplasm, nuclear bodies and extra-nuclear-is provided. For each protein, the most likely human and yeast orthologues, where identifiable through BLASTX analysis, are given with links to relevant information sources.

AB - The Arabidopsis Nucleolar Protein Database (http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/home) provides information on 217 proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture. The database is organized on the basis of the Arabidopsis gene identifier number. The information provided includes protein description, protein class, whether or not the plant protein has a homologue in the most recent human nucleolar proteome and the results of reciprocal BLAST analysis of the human proteome. In addition, for one-third of the 217 Arabidopsis nucleolar proteins, localization images are available from analysis of full-length cDNA-green fluorescent protein (GFP) fusions and the strength of signal in different parts of the cell-nucleolus, nucleolus-associated structures, nucleoplasm, nuclear bodies and extra-nuclear-is provided. For each protein, the most likely human and yeast orthologues, where identifiable through BLASTX analysis, are given with links to relevant information sources.

UR - http://www.mendeley.com/research/arabidopsis-nucleolar-protein-database-atnopdb

U2 - 10.1093/nar/gki052

DO - 10.1093/nar/gki052

M3 - Article

VL - 33

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - DATABASE ISS.

ER -