Comparative visualization of genetic and physical maps with Strudel

Micha Bayer, Iain Milne, Gordon Stephen, Paul Shaw, Linda Cardle, Frank Wright, David Marshall

Research output: Contribution to journalArticleResearchpeer-review

23 Citations (Scopus)

Abstract

UNLABELLED: Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these.

AVAILABILITY AND IMPLEMENTATION: Installers for Strudel are available for Windows, Linux, Solaris and Mac OS X at http://bioinf.scri.ac.uk/strudel/.

Original languageEnglish
Pages (from-to)1307-8
Number of pages2
JournalBioinformatics (Oxford, England)
Volume27
Issue number9
DOIs
Publication statusPrint publication - 1 May 2011
Externally publishedYes

Fingerprint

Synteny
Comparative Genomics
Data visualization
Data Visualization
Linux
Genomics
Large Data Sets
Genome
Visualization
Availability
Genes
Datasets

Keywords

  • Computational Biology/methods
  • Computer Graphics
  • Genome
  • Genomics/methods
  • Physical Chromosome Mapping
  • Software
  • User-Computer Interface

Cite this

Bayer, Micha ; Milne, Iain ; Stephen, Gordon ; Shaw, Paul ; Cardle, Linda ; Wright, Frank ; Marshall, David. / Comparative visualization of genetic and physical maps with Strudel. In: Bioinformatics (Oxford, England). 2011 ; Vol. 27, No. 9. pp. 1307-8.
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Comparative visualization of genetic and physical maps with Strudel. / Bayer, Micha; Milne, Iain; Stephen, Gordon; Shaw, Paul; Cardle, Linda; Wright, Frank; Marshall, David.

In: Bioinformatics (Oxford, England), Vol. 27, No. 9, 01.05.2011, p. 1307-8.

Research output: Contribution to journalArticleResearchpeer-review

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AU - Stephen, Gordon

AU - Shaw, Paul

AU - Cardle, Linda

AU - Wright, Frank

AU - Marshall, David

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KW - Genomics/methods

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