Comparative visualization of genetic and physical maps with Strudel

Micha Bayer; Iain Milne; Gordon Stephen; Paul Shaw; Linda Cardle; Frank Wright; David Marshall

doi:10.1093/bioinformatics/btr111

Comparative visualization of genetic and physical maps with Strudel

Micha Bayer, Iain Milne, Gordon Stephen, Paul Shaw, Linda Cardle, Frank Wright, David Marshall

Research output: Contribution to journal › Article › peer-review

36 Citations (Scopus)

Abstract

UNLABELLED: Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these.

AVAILABILITY AND IMPLEMENTATION: Installers for Strudel are available for Windows, Linux, Solaris and Mac OS X at http://bioinf.scri.ac.uk/strudel/.

Original language	English
Pages (from-to)	1307-8
Number of pages	2
Journal	Bioinformatics (Oxford, England)
Volume	27
Issue number	9
DOIs	https://doi.org/10.1093/bioinformatics/btr111
Publication status	Print publication - 1 May 2011
Externally published	Yes

Keywords

Computational Biology/methods
Computer Graphics
Genome
Genomics/methods
Physical Chromosome Mapping
Software
User-Computer Interface

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10.1093/bioinformatics/btr111

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title = "Comparative visualization of genetic and physical maps with Strudel",

abstract = "UNLABELLED: Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these.AVAILABILITY AND IMPLEMENTATION: Installers for Strudel are available for Windows, Linux, Solaris and Mac OS X at http://bioinf.scri.ac.uk/strudel/.",

keywords = "Computational Biology/methods, Computer Graphics, Genome, Genomics/methods, Physical Chromosome Mapping, Software, User-Computer Interface",

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doi = "10.1093/bioinformatics/btr111",

language = "English",

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T1 - Comparative visualization of genetic and physical maps with Strudel

AU - Bayer, Micha

AU - Milne, Iain

AU - Stephen, Gordon

AU - Shaw, Paul

AU - Cardle, Linda

AU - Wright, Frank

AU - Marshall, David

PY - 2011/5/1

Y1 - 2011/5/1

N2 - UNLABELLED: Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these.AVAILABILITY AND IMPLEMENTATION: Installers for Strudel are available for Windows, Linux, Solaris and Mac OS X at http://bioinf.scri.ac.uk/strudel/.

AB - UNLABELLED: Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these.AVAILABILITY AND IMPLEMENTATION: Installers for Strudel are available for Windows, Linux, Solaris and Mac OS X at http://bioinf.scri.ac.uk/strudel/.

KW - Computational Biology/methods

KW - Computer Graphics

KW - Genome

KW - Genomics/methods

KW - Physical Chromosome Mapping

KW - Software

KW - User-Computer Interface

U2 - 10.1093/bioinformatics/btr111

DO - 10.1093/bioinformatics/btr111

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EP - 1308

JO - Bioinformatics (Oxford, England)

JF - Bioinformatics (Oxford, England)

IS - 9

ER -

Comparative visualization of genetic and physical maps with Strudel

Abstract

Keywords

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