Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms

Ewa Grabowiecka; David Martin; Louise Crozier; Nicola Holden

doi:10.1016/j.dib.2018.11.136

Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms

Ewa Grabowiecka, David Martin, Louise Crozier, Nicola Holden^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

1 Citation (Scopus)

Abstract

Whole transcriptome analysis to investigate differential gene expression and regulatory adaption can be carried out on two different technological platforms: by probe hybridisation to microarrays or by RNAseq for deep sequencing. Since there are difference in terms of their genome coverage, sensitivity and cost, there is a requirement for robust comparisons to determine the platform of choice. Here, we present datasets for the whole transcriptional response verocytoxigenic Escherichia coli (VTEC) obtained from RNA-seq and microarray platforms in response to spinach, together with a comparison between the datasets (available at Array Express: E-MTAB-3249, E-MTAB-4120, E-MTAB-7441).

Original language	English
Pages (from-to)	126-131
Number of pages	6
Journal	Data in Brief
Volume	22
Early online date	30 Nov 2018
DOIs	https://doi.org/10.1016/j.dib.2018.11.136
Publication status	Print publication - Feb 2019
Externally published	Yes

Access to Document

10.1016/j.dib.2018.11.136

Cite this

@article{a4c4c3f57b5c49b99671c82551839499,

title = "Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms",

abstract = "Whole transcriptome analysis to investigate differential gene expression and regulatory adaption can be carried out on two different technological platforms: by probe hybridisation to microarrays or by RNAseq for deep sequencing. Since there are difference in terms of their genome coverage, sensitivity and cost, there is a requirement for robust comparisons to determine the platform of choice. Here, we present datasets for the whole transcriptional response verocytoxigenic Escherichia coli (VTEC) obtained from RNA-seq and microarray platforms in response to spinach, together with a comparison between the datasets (available at Array Express: E-MTAB-3249, E-MTAB-4120, E-MTAB-7441).",

author = "Ewa Grabowiecka and David Martin and Louise Crozier and Nicola Holden",

year = "2019",

month = feb,

doi = "10.1016/j.dib.2018.11.136",

language = "English",

volume = "22",

pages = "126--131",

journal = "Data in Brief",

issn = "2352-3409",

publisher = "Elsevier",

}

TY - JOUR

T1 - Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms

AU - Grabowiecka, Ewa

AU - Martin, David

AU - Crozier, Louise

AU - Holden, Nicola

PY - 2019/2

Y1 - 2019/2

N2 - Whole transcriptome analysis to investigate differential gene expression and regulatory adaption can be carried out on two different technological platforms: by probe hybridisation to microarrays or by RNAseq for deep sequencing. Since there are difference in terms of their genome coverage, sensitivity and cost, there is a requirement for robust comparisons to determine the platform of choice. Here, we present datasets for the whole transcriptional response verocytoxigenic Escherichia coli (VTEC) obtained from RNA-seq and microarray platforms in response to spinach, together with a comparison between the datasets (available at Array Express: E-MTAB-3249, E-MTAB-4120, E-MTAB-7441).

AB - Whole transcriptome analysis to investigate differential gene expression and regulatory adaption can be carried out on two different technological platforms: by probe hybridisation to microarrays or by RNAseq for deep sequencing. Since there are difference in terms of their genome coverage, sensitivity and cost, there is a requirement for robust comparisons to determine the platform of choice. Here, we present datasets for the whole transcriptional response verocytoxigenic Escherichia coli (VTEC) obtained from RNA-seq and microarray platforms in response to spinach, together with a comparison between the datasets (available at Array Express: E-MTAB-3249, E-MTAB-4120, E-MTAB-7441).

UR - http://www.scopus.com/inward/record.url?scp=85058401269&partnerID=8YFLogxK

U2 - 10.1016/j.dib.2018.11.136

DO - 10.1016/j.dib.2018.11.136

M3 - Article

C2 - 30581915

AN - SCOPUS:85058401269

SN - 2352-3409

VL - 22

SP - 126

EP - 131

JO - Data in Brief

JF - Data in Brief

ER -

Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms

Abstract

Access to Document

Other files and links

Fingerprint

Cite this