Flapjack--graphical genotype visualization

Iain Milne, Paul Shaw, Gordon Stephen, Micha Bayer, Linda Cardle, William T B Thomas, Andrew J Flavell, David Marshall*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

124 Citations (Scopus)

Abstract

SUMMARY: New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism (SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features.

AVAILABILITY: Flapjack is freely available for Microsoft Windows, Mac OS X, Linux and Solaris, and can be downloaded from http://bioinf.scri.ac.uk/flapjack .

Original languageEnglish
Pages (from-to)3133-4
Number of pages2
JournalBioinformatics (Oxford, England)
Volume26
Issue number24
DOIs
Publication statusPrint publication - 15 Dec 2010
Externally publishedYes

Keywords

  • Chromosome Mapping
  • Computer Graphics
  • Genotype
  • Polymorphism, Single Nucleotide
  • Quantitative Trait Loci
  • Software

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