Genomic associations with somatic cell score in first-lactation Holstein cows

S Wijga, JWM Bastiaansen, E Wall, E Strandberg, Y De Haas, L Giblin, H Bovenhuis

Research output: Contribution to journalArticle

16 Citations (Scopus)

Abstract

This genome-wide association study aimed to identify loci associated with lactation-average somatic cell score (LASCS) and the standard deviation of test-day somatic cell score (SCS-SD). It is one of the first studies to combine detailed phenotypic and genotypic cow data from research dairy herds located in different countries. The combined data set contained up to 52 individual test-days per lactation and thereby aimed to capture temporary increases in somatic cell score associated with infection. Phenotypic data for analysis consisted of 46,882 test-day records on 1,484 cows, and genotypic data consisted of 37,590 single nucleotide polymorphisms (SNP). Using an animal model, the associations between each individual SNP and the phenotypic data were estimated. To account for the risk of false positives, a false discovery rate threshold of 0.20 was set. The analyses showed that LASCS was significantly associated with a SNP on Bos taurus autosome (BTA) 4 and a SNP on BTA18. Likewise, SCS-SD was associated with this SNP on BTA18. In addition, SCS-SD significantly associated with a SNP on BTA6. Relatively few associations were found, suggesting that LASCS and SCS-SD are controlled by multiple loci distributed across the genome, each with a relatively small effect. Increased knowledge on genetic regulation of LASCS and SCS-SD may aid in identification of genes that play a role in mastitis resistance. Such knowledge helps us understand the genetic mechanisms leading to mastitis and in discovery of targets for mastitis therapeutics.
Original languageEnglish
Pages (from-to)899 - 908
Number of pages10
JournalJournal of Dairy Science
Publication statusFirst published - 2012

Fingerprint

somatic cells
single nucleotide polymorphism
Holstein
lactation
genomics
cows
mastitis
loci
autosomes
testing
dairy herds
data analysis
animal models
therapeutics
genome
cattle
infection
genes

Bibliographical note

1023260

Keywords

  • Dairy cow
  • Genome wide
  • Mastitis
  • Single nucleotide polymorphism

Cite this

Wijga, S., Bastiaansen, JWM., Wall, E., Strandberg, E., De Haas, Y., Giblin, L., & Bovenhuis, H. (2012). Genomic associations with somatic cell score in first-lactation Holstein cows. Journal of Dairy Science, 899 - 908.
Wijga, S ; Bastiaansen, JWM ; Wall, E ; Strandberg, E ; De Haas, Y ; Giblin, L ; Bovenhuis, H. / Genomic associations with somatic cell score in first-lactation Holstein cows. In: Journal of Dairy Science. 2012 ; pp. 899 - 908.
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Wijga, S, Bastiaansen, JWM, Wall, E, Strandberg, E, De Haas, Y, Giblin, L & Bovenhuis, H 2012, 'Genomic associations with somatic cell score in first-lactation Holstein cows', Journal of Dairy Science, pp. 899 - 908.

Genomic associations with somatic cell score in first-lactation Holstein cows. / Wijga, S; Bastiaansen, JWM; Wall, E; Strandberg, E; De Haas, Y; Giblin, L; Bovenhuis, H.

In: Journal of Dairy Science, 2012, p. 899 - 908.

Research output: Contribution to journalArticle

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T1 - Genomic associations with somatic cell score in first-lactation Holstein cows

AU - Wijga, S

AU - Bastiaansen, JWM

AU - Wall, E

AU - Strandberg, E

AU - De Haas, Y

AU - Giblin, L

AU - Bovenhuis, H

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AB - This genome-wide association study aimed to identify loci associated with lactation-average somatic cell score (LASCS) and the standard deviation of test-day somatic cell score (SCS-SD). It is one of the first studies to combine detailed phenotypic and genotypic cow data from research dairy herds located in different countries. The combined data set contained up to 52 individual test-days per lactation and thereby aimed to capture temporary increases in somatic cell score associated with infection. Phenotypic data for analysis consisted of 46,882 test-day records on 1,484 cows, and genotypic data consisted of 37,590 single nucleotide polymorphisms (SNP). Using an animal model, the associations between each individual SNP and the phenotypic data were estimated. To account for the risk of false positives, a false discovery rate threshold of 0.20 was set. The analyses showed that LASCS was significantly associated with a SNP on Bos taurus autosome (BTA) 4 and a SNP on BTA18. Likewise, SCS-SD was associated with this SNP on BTA18. In addition, SCS-SD significantly associated with a SNP on BTA6. Relatively few associations were found, suggesting that LASCS and SCS-SD are controlled by multiple loci distributed across the genome, each with a relatively small effect. Increased knowledge on genetic regulation of LASCS and SCS-SD may aid in identification of genes that play a role in mastitis resistance. Such knowledge helps us understand the genetic mechanisms leading to mastitis and in discovery of targets for mastitis therapeutics.

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Wijga S, Bastiaansen JWM, Wall E, Strandberg E, De Haas Y, Giblin L et al. Genomic associations with somatic cell score in first-lactation Holstein cows. Journal of Dairy Science. 2012;899 - 908.