Identifying new sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia

N Blavet; H Bavet; A Muyle; J Kafer; R Cegan; C Deschamps; N Zemp; S Mousset; S Aubourg; R Bergero; Deborah  Charlesworth; Roman Hobza; Alex Widmer; Gabriel Marais

doi:10.1186/s12864-015-1698-7

Identifying new sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia

N Blavet, H Bavet, A Muyle, J Kafer, R Cegan, C Deschamps, N Zemp, S Mousset, S Aubourg, R Bergero, Deborah Charlesworth, Roman Hobza, Alex Widmer, Gabriel Marais

Research output: Contribution to journal › Article › peer-review

18 Citations (Scopus)

Abstract

Silene latifolia represents one of the best-studied plant sex chromosome systems. A new approach using RNA-seq data has recently identified hundreds of new sex-linked genes in this species. However, this approach is expected to miss genes that are either not expressed or are expressed at low levels in the tissue(s) used for RNA-seq. Therefore other independent approaches are needed to discover such sex-linked genes.

Original language	English
Article number	546
Journal	BMC Genomics
Volume	16
Issue number	1
DOIs	https://doi.org/10.1186/s12864-015-1698-7
Publication status	Print publication - 25 Jul 2015
Externally published	Yes

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title = "Identifying new sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia",

abstract = "Silene latifolia represents one of the best-studied plant sex chromosome systems. A new approach using RNA-seq data has recently identified hundreds of new sex-linked genes in this species. However, this approach is expected to miss genes that are either not expressed or are expressed at low levels in the tissue(s) used for RNA-seq. Therefore other independent approaches are needed to discover such sex-linked genes.",

author = "N Blavet and H Bavet and A Muyle and J Kafer and R Cegan and C Deschamps and N Zemp and S Mousset and S Aubourg and R Bergero and Deborah Charlesworth and Roman Hobza and Alex Widmer and Gabriel Marais",

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AU - Blavet, N

AU - Bavet, H

AU - Muyle, A

AU - Kafer, J

AU - Cegan, R

AU - Deschamps, C

AU - Zemp, N

AU - Mousset, S

AU - Aubourg, S

AU - Bergero, R

AU - Charlesworth, Deborah

AU - Hobza, Roman

AU - Widmer, Alex

AU - Marais, Gabriel

PY - 2015/7/25

Y1 - 2015/7/25

N2 - Silene latifolia represents one of the best-studied plant sex chromosome systems. A new approach using RNA-seq data has recently identified hundreds of new sex-linked genes in this species. However, this approach is expected to miss genes that are either not expressed or are expressed at low levels in the tissue(s) used for RNA-seq. Therefore other independent approaches are needed to discover such sex-linked genes.

AB - Silene latifolia represents one of the best-studied plant sex chromosome systems. A new approach using RNA-seq data has recently identified hundreds of new sex-linked genes in this species. However, this approach is expected to miss genes that are either not expressed or are expressed at low levels in the tissue(s) used for RNA-seq. Therefore other independent approaches are needed to discover such sex-linked genes.

U2 - 10.1186/s12864-015-1698-7

DO - 10.1186/s12864-015-1698-7

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JO - BMC Genomics

JF - BMC Genomics

IS - 1

M1 - 546

ER -

Identifying new sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia

Abstract

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