KOunt: a reproducible KEGG orthologue abundance workflow

Jennifer Mattock*, Marina Martínez-Álvaro, Matthew A Cleveland, Rainer Roehe, Mick Watson

*Corresponding author for this work

Research output: Contribution to journalData articlepeer-review

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Abstract

Accurate gene prediction is essential for successful metagenome analysis. We present KOunt, a Snakemake pipeline, that precisely quantifies KEGG orthologue abundance.
Original languageEnglish
Article numberbtad483
JournalBioinformatics (Oxford, England)
Volume39
Issue number8
Early online date3 Aug 2023
DOIs
Publication statusFirst published - 3 Aug 2023

Keywords

  • Workflow
  • Metagenome
  • Software
  • Databases, Factual

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