TY - JOUR
T1 - Metagenome dataset of wheat rhizosphere from Ghazipur region of Eastern Uttar Pradesh
AU - Srivastava, Ruchi
AU - Srivastava, Alok K.
AU - Ramteke, Promod W.
AU - Gupta, Vijai K.
AU - Srivastava, Anchal K.
PY - 2020/2
Y1 - 2020/2
N2 - Wheat is the major crop in India and like other crops also subjected to influence by microbial communities of the rhizospheric region which are extremely diverse and undoubtedly play a central role in the nutrient cycle, plant productivity and growth promotion. In order to know how changes in the rhizospheric microbial community can make an impact on overall crop function, wheat rhizospheric soil samples from Ghazipur (25.913824 N 83.529715 E) regions of Eastern Uttar Pradesh (Eastern Indogangatic Plain), were collected and analyzed. Full length 16S rRNA gene amplification sequencing was performed to reveal the bacterial community in wheat rhizosphere. A total of 51,909 read were analyzed, out of that only 44,125 reads were classified and 7784 were unclassified using oxford nanopore sequencing and EPI2ME data analysis platform. MinION oxford nanopore sequencing uncovered that dominant phyla were Proteobacteria (68%), followed by firmicutes (13%), bacteroidetes (3%), actinobacteria (3%) and acidobacteria (3%). The data is available at the NCBI - Sequence Read Archive (SRA) with accession number: SRX5275271.
AB - Wheat is the major crop in India and like other crops also subjected to influence by microbial communities of the rhizospheric region which are extremely diverse and undoubtedly play a central role in the nutrient cycle, plant productivity and growth promotion. In order to know how changes in the rhizospheric microbial community can make an impact on overall crop function, wheat rhizospheric soil samples from Ghazipur (25.913824 N 83.529715 E) regions of Eastern Uttar Pradesh (Eastern Indogangatic Plain), were collected and analyzed. Full length 16S rRNA gene amplification sequencing was performed to reveal the bacterial community in wheat rhizosphere. A total of 51,909 read were analyzed, out of that only 44,125 reads were classified and 7784 were unclassified using oxford nanopore sequencing and EPI2ME data analysis platform. MinION oxford nanopore sequencing uncovered that dominant phyla were Proteobacteria (68%), followed by firmicutes (13%), bacteroidetes (3%), actinobacteria (3%) and acidobacteria (3%). The data is available at the NCBI - Sequence Read Archive (SRA) with accession number: SRX5275271.
KW - Indo Gangetic plain
KW - MinION oxford nanopore
KW - Sequence read archive
KW - Wheat rhizosphere
UR - http://www.scopus.com/inward/record.url?scp=85077655736&partnerID=8YFLogxK
U2 - 10.1016/j.dib.2019.105094
DO - 10.1016/j.dib.2019.105094
M3 - Data article
C2 - 31956680
AN - SCOPUS:85077655736
SN - 2352-3409
VL - 28
JO - Data in Brief
JF - Data in Brief
M1 - 105094
ER -