TY - JOUR
T1 - Potential of milk mid-IR spectra to predict metabolic status of cows through blood components and an innovative clustering approach
AU - Grelet, C.
AU - Vanlierde, A.
AU - Hostens, M.
AU - Foldager, L.
AU - Salavati, M.
AU - Ingvartsen, K. L.
AU - Crowe, M.
AU - Sorensen, M. T.
AU - Froidmont, E.
AU - Ferris, C. P.
AU - Marchitelli, C.
AU - Becker, F.
AU - Larsen, T.
AU - Carter, F.
AU - Dehareng, F.
AU - Santoro, Andreia
AU - Byrne, Colin
AU - Rudd, Pauline
AU - O'Flaherty, Roisin
AU - Hallinan, Sinead
AU - Wathes, Claire
AU - Cheng, Zhangrui
AU - Fouladi, Ali
AU - Pollott, Geoff
AU - Werling, Dirk
AU - Bernardo, Beatriz Sanz
AU - Wylie, Alistair
AU - Bell, Matt
AU - Vaneetvelde, Mieke
AU - Hermans, Kristof
AU - Opsomer, Geert
AU - Moerman, Sander
AU - De Koster, Jenne
AU - Bogaert, Hannes
AU - Vandepitte, Jan
AU - Vandevelde, Leila
AU - Vanranst, Bonny
AU - Hoglund, Johanna
AU - Dahl, Susanne
AU - Ostergaard, Soren
AU - Rothmann, Janne
AU - Krogh, Mogens
AU - Meyer, Else
AU - Gaillard, Charlotte
AU - Ettema, Jehan
AU - Rousing, Tine
AU - Signorelli, Federica
AU - Napolitano, Francesco
AU - Moioli, Bianca
AU - Crisà, Alessandra
AU - Buttazzoni, Luca
AU - McClure, Jennifer
AU - Matthews, Daragh
AU - Kearney, Francis
AU - Cromie, Andrew
AU - McClure, Matt
AU - Zhang, Shujun
AU - Chen, Xing
AU - Chen, Huanchun
AU - Zhao, Junlong
AU - Yang, Liguo
AU - Hua, Guohua
AU - Tan, Chen
AU - Wang, Guiqiang
AU - Bonneau, Michel
AU - Pompozzi, Andrea
AU - Pearn, Armin
AU - Evertson, Arnold
AU - Kosten, Linda
AU - Fogh, Anders
AU - Andersen, Thomas
AU - Lucy, Matthew
AU - Elsik, Chris
AU - Conant, Gavin
AU - Taylor, Jerry
AU - Gengler, Nicolas
AU - Georges, Michel
AU - Colinet, Frederic
AU - Pamplona, Marilou Ramos
AU - Hammami, Hedi
AU - GplusE Consortium
PY - 2019/3/1
Y1 - 2019/3/1
N2 - Unbalanced metabolic status in the weeks after calving predisposes dairy cows to metabolic and infectious diseases. Blood glucose, IGF-I, non-esterified fatty acids (NEFA) and β-hydroxybutyrate (BHB) are used as indicators of the metabolic status of cows. This work aims to (1) evaluate the potential of milk mid-IR spectra to predict these blood components individually and (2) to evaluate the possibility of predicting the metabolic status of cows based on the clustering of these blood components. Blood samples were collected from 241 Holstein cows on six experimental farms, at days 14 and 35 after calving. Blood samples were analyzed by reference analysis and metabolic status was defined by k-means clustering (k=3) based on the four blood components. Milk mid-IR analyses were undertaken on different instruments and the spectra were harmonized into a common standardized format. Quantitative models predicting blood components were developed using partial least squares regression and discriminant models aiming to differentiate the metabolic status were developed with partial least squares discriminant analysis. Cross-validations were performed for both quantitative and discriminant models using four subsets randomly constituted. Blood glucose, IGF-I, NEFA and BHB were predicted with respective R 2 of calibration of 0.55, 0.69, 0.49 and 0.77, and R 2 of cross-validation of 0.44, 0.61, 0.39 and 0.70. Although these models were not able to provide precise quantitative values, they allow for screening of individual milk samples for high or low values. The clustering methodology led to the sharing out of the data set into three groups of cows representing healthy, moderately impacted and imbalanced metabolic status. The discriminant models allow to fairly classify the three groups, with a global percentage of correct classification up to 74%. When discriminating the cows with imbalanced metabolic status from cows with healthy and moderately impacted metabolic status, the models were able to distinguish imbalanced group with a global percentage of correct classification up to 92%. The performances were satisfactory considering the variables are not present in milk, and consequently predicted indirectly. This work showed the potential of milk mid-IR analysis to provide new metabolic status indicators based on individual blood components or a combination of these variables into a global status. Models have been developed within a standardized spectral format, and although robustness should preferably be improved with additional data integrating different geographic regions, diets and breeds, they constitute rapid, cost-effective and large-scale tools for management and breeding of dairy cows.
AB - Unbalanced metabolic status in the weeks after calving predisposes dairy cows to metabolic and infectious diseases. Blood glucose, IGF-I, non-esterified fatty acids (NEFA) and β-hydroxybutyrate (BHB) are used as indicators of the metabolic status of cows. This work aims to (1) evaluate the potential of milk mid-IR spectra to predict these blood components individually and (2) to evaluate the possibility of predicting the metabolic status of cows based on the clustering of these blood components. Blood samples were collected from 241 Holstein cows on six experimental farms, at days 14 and 35 after calving. Blood samples were analyzed by reference analysis and metabolic status was defined by k-means clustering (k=3) based on the four blood components. Milk mid-IR analyses were undertaken on different instruments and the spectra were harmonized into a common standardized format. Quantitative models predicting blood components were developed using partial least squares regression and discriminant models aiming to differentiate the metabolic status were developed with partial least squares discriminant analysis. Cross-validations were performed for both quantitative and discriminant models using four subsets randomly constituted. Blood glucose, IGF-I, NEFA and BHB were predicted with respective R 2 of calibration of 0.55, 0.69, 0.49 and 0.77, and R 2 of cross-validation of 0.44, 0.61, 0.39 and 0.70. Although these models were not able to provide precise quantitative values, they allow for screening of individual milk samples for high or low values. The clustering methodology led to the sharing out of the data set into three groups of cows representing healthy, moderately impacted and imbalanced metabolic status. The discriminant models allow to fairly classify the three groups, with a global percentage of correct classification up to 74%. When discriminating the cows with imbalanced metabolic status from cows with healthy and moderately impacted metabolic status, the models were able to distinguish imbalanced group with a global percentage of correct classification up to 92%. The performances were satisfactory considering the variables are not present in milk, and consequently predicted indirectly. This work showed the potential of milk mid-IR analysis to provide new metabolic status indicators based on individual blood components or a combination of these variables into a global status. Models have been developed within a standardized spectral format, and although robustness should preferably be improved with additional data integrating different geographic regions, diets and breeds, they constitute rapid, cost-effective and large-scale tools for management and breeding of dairy cows.
KW - biomarker
KW - dairy cattle
KW - Fourier transform mid-IR spectrometry
KW - metabolic clustering
KW - prediction
UR - http://www.scopus.com/inward/record.url?scp=85049846553&partnerID=8YFLogxK
U2 - 10.1017/S1751731118001751
DO - 10.1017/S1751731118001751
M3 - Article
C2 - 29987991
AN - SCOPUS:85049846553
SN - 1751-7311
VL - 13
SP - 649
EP - 658
JO - Animal
JF - Animal
IS - 3
ER -