Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

Iain Milne; Micha Bayer; Gordon Stephen; Linda Cardle; David Marshall

doi:10.1007/978-1-4939-3167-5_14

Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

Iain Milne, Micha Bayer, Gordon Stephen, Linda Cardle, David Marshall

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

36 Citations (Scopus)

Abstract

This chapter is designed to be a practical guide to using Tablet for the visualization of next/second-generation (NGS) sequencing data. NGS data is being produced more frequently and in greater data volumes every year. As such, it is increasingly important to have tools which enable biologists and bioinformaticians to understand and gain key insights into their data. Visualization can play a key role in the exploration of such data as well as aid in the visual validation of sequence assemblies and features such as single nucleotide polymorphisms (SNPs). We aim to show several use cases which demonstrate Tablet's ability to visually highlight various situations of interest which can arise in NGS data.

Original language	English
Title of host publication	Plant Bioinformatics
Subtitle of host publication	Methods and Protocols
Editors	David Edwards
Publisher	Springer
Pages	253-68
Number of pages	16
Volume	1374
ISBN (Electronic)	1940-6029
ISBN (Print)	1064-3745
DOIs	https://doi.org/10.1007/978-1-4939-3167-5_14
Publication status	Print publication - 2016
Externally published	Yes

Bibliographical note

Springer Science+Business Media New York 2016

Keywords

Chromosome Mapping/methods
Computational Biology/methods
Genomics/methods
High-Throughput Nucleotide Sequencing
Sequence Analysis, DNA/methods
Software
Web Browser

Access to Document

10.1007/978-1-4939-3167-5_14

Cite this

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title = "Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings",

abstract = "This chapter is designed to be a practical guide to using Tablet for the visualization of next/second-generation (NGS) sequencing data. NGS data is being produced more frequently and in greater data volumes every year. As such, it is increasingly important to have tools which enable biologists and bioinformaticians to understand and gain key insights into their data. Visualization can play a key role in the exploration of such data as well as aid in the visual validation of sequence assemblies and features such as single nucleotide polymorphisms (SNPs). We aim to show several use cases which demonstrate Tablet's ability to visually highlight various situations of interest which can arise in NGS data. ",

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doi = "10.1007/978-1-4939-3167-5_14",

language = "English",

isbn = "1064-3745",

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AU - Bayer, Micha

AU - Stephen, Gordon

AU - Cardle, Linda

AU - Marshall, David

N1 - Springer Science+Business Media New York 2016

PY - 2016

Y1 - 2016

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AB - This chapter is designed to be a practical guide to using Tablet for the visualization of next/second-generation (NGS) sequencing data. NGS data is being produced more frequently and in greater data volumes every year. As such, it is increasingly important to have tools which enable biologists and bioinformaticians to understand and gain key insights into their data. Visualization can play a key role in the exploration of such data as well as aid in the visual validation of sequence assemblies and features such as single nucleotide polymorphisms (SNPs). We aim to show several use cases which demonstrate Tablet's ability to visually highlight various situations of interest which can arise in NGS data.

KW - Chromosome Mapping/methods

KW - Computational Biology/methods

KW - Genomics/methods

KW - High-Throughput Nucleotide Sequencing

KW - Sequence Analysis, DNA/methods

KW - Software

KW - Web Browser

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DO - 10.1007/978-1-4939-3167-5_14

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SN - 1064-3745

VL - 1374

SP - 253

EP - 268

BT - Plant Bioinformatics

A2 - Edwards, David

PB - Springer

ER -

Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

Abstract

Bibliographical note

Keywords

Access to Document

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