The madness of microbiome: attempting to find consensus "best practice" for 16S microbiome studies

J Pollock, L Glendinning, T Wisedchanwet, M Watson

Research output: Contribution to journalArticle

69 Citations (Scopus)
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Abstract

The development and continuous improvement of high-throughput sequencing platforms has stimulated interest in the study of complex microbial communities. Currently, the most popular sequencing approach to study microbial community composition and dynamics is targeted 16S rRNA gene metabarcoding. To prepare samples for sequencing, there are a variety of processing steps, each with the potential to introduce bias at the data analysis stage. In this short review, key information from the literature pertaining to each processing step is described and consequently, general recommendations for future 16S rRNA gene metabarcoding experiments are made.
Original languageEnglish
Article numbere02627-17
JournalApplied and Environmental Microbiology
Volume84
Issue number7
Early online date2 Feb 2018
DOIs
Publication statusFirst published - 2 Feb 2018

Fingerprint

Microbiota
rRNA Genes
Practice Guidelines

Bibliographical note

1025227

Keywords

  • 16S RNA
  • DNA sequencing
  • Microbiome

Cite this

Pollock, J ; Glendinning, L ; Wisedchanwet, T ; Watson, M. / The madness of microbiome: attempting to find consensus "best practice" for 16S microbiome studies. In: Applied and Environmental Microbiology. 2018 ; Vol. 84, No. 7.
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The madness of microbiome: attempting to find consensus "best practice" for 16S microbiome studies. / Pollock, J; Glendinning, L; Wisedchanwet, T; Watson, M.

In: Applied and Environmental Microbiology, Vol. 84, No. 7, e02627-17, 02.02.2018.

Research output: Contribution to journalArticle

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